mRNA_A-nodosum_M_contig9038.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9038.4.1
Unique NamemRNA_A-nodosum_M_contig9038.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 172 bits (436), Expect = 1.570e-54
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            MSGGSTGER FSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYF QDRQQVPLVNDRFNVTQEIEDFTRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 161 bits (408), Expect = 2.940e-50
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            MSGGSTGER FSDIITSVRYWIIHSITIPSLF+SGWLFVSTGLAYDVFGTPRPNEYF QDRQQ+PLVNDRF+  QE+ED T+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 160 bits (405), Expect = 8.440e-50
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            MSGGSTGER FSDIITSVRYWIIH+ITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF QDRQQVPLVNDRF+  QE+ED T+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 9.590e-49
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   13 GSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            GSTGER FSDIITS+RYWIIHSITIPSLF+SGWLFVSTGLAYDVFGTPRPNEYF+QDRQQVPLVNDRFN  QE+ED T+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 158 bits (399), Expect = 1.400e-48
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            MSGGSTGER FSDIITS+RYW+IHSITIP+LF++GWLFVSTGLAYDVFGTPRPNEYF QDRQQVPLVNDRF+  QE+ED T+G+
Sbjct:   24 MSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 157 bits (397), Expect = 1.400e-48
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            MSGGSTGER FSDIITS+RYWIIHSITIP+LF++GWLFVSTGLAYD+FGTPRPNEYF Q+RQQVPLVNDRF+  QE+ED T+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: D4NY69_GALSU (Cytochrome b559 subunit alpha n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D4NY69_GALSU)

HSP 1 Score: 157 bits (397), Expect = 1.400e-48
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            M+GGSTGER FSDIITSVRYW+IHSITIP+LFI+GWLF STGLAYD+FGTPRPNEYF+ DR+QVPL+NDRFNV QE+ED TRGL
Sbjct:    1 MAGGSTGERPFSDIITSVRYWVIHSITIPALFIAGWLFTSTGLAYDIFGTPRPNEYFSNDREQVPLLNDRFNVKQELEDLTRGL 84
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 158 bits (399), Expect = 1.850e-48
Identity = 70/85 (82.35%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 NMSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            +MSGGSTGER FSDIITS+RYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRPNEYF QDRQQVPLVNDRF+  QE+E+ T+G+
Sbjct:   32 SMSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 157 bits (396), Expect = 2.120e-48
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            MSGGSTGER FSDIITSVRYW+IHSITIPSLFI+GWLFVSTGLAYDVFGTPRP+EYF QDRQQVPL+NDRF+V QE+ED T+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Match: T1RIP1_9STRA (Cytochrome b559 subunit alpha n=5 Tax=Monodopsidaceae TaxID=425072 RepID=T1RIP1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.890e-48
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   13 GSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL 255
            GSTGER FSDIITSVRYWIIHSITIPSLF+SGWLFV TGLAYDVFGTPRPNEYF+QDRQQVPLVNDRFN  QE++D T+GL
Sbjct:    3 GSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVGTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELDDLTKGL 83
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B9TNT0_SARFS1.570e-5497.62Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax... [more]
PSBE_PHATC2.940e-5088.10Cytochrome b559 subunit alpha n=39 Tax=cellular or... [more]
PSBE_THAPS8.440e-5086.90Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ... [more]
A0A0D3M5E1_9STRA9.590e-4988.89Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta... [more]
A0A6M3WCX6_COROI1.400e-4883.33Cytochrome b559 subunit alpha n=87 Tax=Florideophy... [more]
PSBE_GUITH1.400e-4883.33Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T... [more]
D4NY69_GALSU1.400e-4883.33Cytochrome b559 subunit alpha n=1 Tax=Galdieria su... [more]
A0A3G1I9C5_9FLOR1.850e-4882.35Cytochrome b559 subunit alpha n=3 Tax=Batrachosper... [more]
A0A1C9CFD7_9FLOR2.120e-4884.52Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi... [more]
T1RIP1_9STRA7.890e-4887.65Cytochrome b559 subunit alpha n=5 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12715..12972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J7D5
Preferred namepsbE
PFAMsCytochrom_B559,Cytochrom_B559a,PsbL
Model size258
Max annot lvl2759|Eukaryota
KEGG koko:K02707,ko:K02713
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-51
EggNOG OGs2CHYC@1|root,2S3QA@2759|Eukaryota
Descriptionphotosynthetic electron transport chain
Cds size255
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870350.7515182-CDS-A-nodosum_M_contig9038:12714..129691680870350.7515182-CDS-A-nodosum_M_contig9038:12714..12969Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9038 12715..12969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870350.7644827-UTR-A-nodosum_M_contig9038:12969..129721680870350.7644827-UTR-A-nodosum_M_contig9038:12969..12972Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9038 12970..12972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.4.1prot_A-nodosum_M_contig9038.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9038 12715..12969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9038.4.1

>prot_A-nodosum_M_contig9038.4.1 ID=prot_A-nodosum_M_contig9038.4.1|Name=mRNA_A-nodosum_M_contig9038.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MSGGSTGERSFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGT
PRPNEYFAQDRQQVPLVNDRFNVTQEIEDFTRGL*
back to top

mRNA from alignment at A-nodosum_M_contig9038:12715..12972-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9038.4.1 ID=mRNA_A-nodosum_M_contig9038.4.1|Name=mRNA_A-nodosum_M_contig9038.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12715..12972- (Ascophyllum nodosum dioecious)
AACATGTCTGGTGGTTCAACAGGAGAACGTTCTTTTTCTGATATTATAAC
AAGTGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCATTATTTA
TTTCTGGTTGGCTTTTTGTAAGTACTGGATTAGCTTATGATGTTTTTGGA
ACTCCTAGACCTAATGAGTATTTTGCACAAGATAGACAACAAGTTCCATT
AGTAAATGATAGATTTAACGTTACTCAAGAAATTGAAGATTTCACTCGAG
GTCTATAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9038:12715..12972-

>mRNA_A-nodosum_M_contig9038.4.1 ID=mRNA_A-nodosum_M_contig9038.4.1|Name=mRNA_A-nodosum_M_contig9038.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12715..12972- (Ascophyllum nodosum dioecious)
ATGTCTGGTGGTTCAACAGGAGAACGTTCTTTTTCTGATATTATAACAAG
TGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCATTATTTATTT
CTGGTTGGCTTTTTGTAAGTACTGGATTAGCTTATGATGTTTTTGGAACT
CCTAGACCTAATGAGTATTTTGCACAAGATAGACAACAAGTTCCATTAGT
AAATGATAGATTTAACGTTACTCAAGAAATTGAAGATTTCACTCGAGGTC
TATAA
back to top