prot_A-nodosum_M_contig9038.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9038.3.1
Unique Nameprot_A-nodosum_M_contig9038.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length44
Homology
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-23
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 VTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            +TRNTNQPVAYPIFTFRWLAIHGLAVPTIFF+GAITSMQFIQR
Sbjct:    1 MTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-21
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    3 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            R+TNQPV YPIFTFRWLA+HGLAVPTIFFLG ITSMQFIQR
Sbjct:    3 RSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 8.370e-21
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            NTNQP+ YPIFTFRWLAIHGL VPT+FFLGAITSMQFIQR
Sbjct:    5 NTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 84.3 bits (207), Expect = 8.370e-21
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            N NQPV+YPIFTFRWLAIHGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_EMIHU (Cytochrome b559 subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=PSBF_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-20
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            NTNQPVAYPIFTFRWL IH LAVPT+FFLGAITSMQFIQR
Sbjct:    3 NTNQPVAYPIFTFRWLTIHALAVPTVFFLGAITSMQFIQR 42          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A0D3M5G8_9STRA (Cytochrome b559 subunit beta n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0D3M5G8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-20
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    3 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            +NTNQPV YPIFTFRWLA+HGLAVPT+FFLG+IT+MQFIQR
Sbjct:    2 QNTNQPVVYPIFTFRWLAVHGLAVPTVFFLGSITAMQFIQR 42          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-20
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    3 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            R TNQPV YPIFTFRWLA+HGLA+PT+FFLGAIT+MQFIQR
Sbjct:    3 RGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_PHATC (Cytochrome b559 subunit beta n=81 Tax=cellular organisms TaxID=131567 RepID=PSBF_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-20
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 VTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            + +N NQPVAYPIFTFRWLAIHGLA+PT+FFLG IT+MQFIQR
Sbjct:    1 MAKNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR 43          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_GRATL (Cytochrome b559 subunit beta n=77 Tax=Rhodophyta TaxID=2763 RepID=PSBF_GRATL)

HSP 1 Score: 83.6 bits (205), Expect = 1.690e-20
Identity = 34/40 (85.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            N+NQP++YPIFTFRWLAIHG+A+PT+FFLGAITSMQFIQR
Sbjct:    5 NSNQPISYPIFTFRWLAIHGIAIPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A1C9CFH9_9FLOR (Cytochrome b559 subunit beta n=10 Tax=Florideophyceae TaxID=2806 RepID=A0A1C9CFH9_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 1.690e-20
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 43
            N NQP++YPIFTFRWLAIHGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NINQPISYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GJY0_COSCS1.030e-2395.35Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A3R5UAF7_9STRA5.760e-2190.24Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A1C9CCM0_9RHOD8.370e-2190.00Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_NEOYE8.370e-2190.00Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]
PSBF_EMIHU1.140e-2092.50Cytochrome b559 subunit beta n=11 Tax=Eukaryota Ta... [more]
A0A0D3M5G8_9STRA1.140e-2085.37Cytochrome b559 subunit beta n=3 Tax=cellular orga... [more]
A0A3R5TZL4_9STRA1.160e-2085.37Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]
PSBF_PHATC1.660e-2081.40Cytochrome b559 subunit beta n=81 Tax=cellular org... [more]
PSBF_GRATL1.690e-2085.00Cytochrome b559 subunit beta n=77 Tax=Rhodophyta T... [more]
A0A1C9CFH9_9FLOR1.690e-2087.50Cytochrome b559 subunit beta n=10 Tax=Florideophyc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006241Photosystem II cytochrome b559, beta subunitPIRSFPIRSF000037Cytochrome_PsbFcoord: 1..43
e-value: 2.0E-27
score: 92.2
IPR006241Photosystem II cytochrome b559, beta subunitTIGRFAMTIGR01333TIGR01333coord: 6..43
e-value: 2.2E-27
score: 92.3
IPR006241Photosystem II cytochrome b559, beta subunitPANTHERPTHR33391:SF14CYTOCHROME B559 SUBUNIT BETAcoord: 10..42
IPR006241Photosystem II cytochrome b559, beta subunitHAMAPMF_00643PSII_PsbFcoord: 5..43
score: 20.068459
IPR013081Photosystem II cytochrome b559, N-terminalPFAMPF00283Cytochrom_B559coord: 6..33
e-value: 7.2E-18
score: 63.7
NoneNo IPR availablePANTHERPTHR33391CYTOCHROME B559 SUBUNIT BETA-RELATEDcoord: 10..42
NoneNo IPR availableSUPERFAMILY161045Cytochrome b559 subunitscoord: 10..43
IPR006216Photosystem II cytochrome b559, conserved sitePROSITEPS00537CYTOCHROME_B559coord: 13..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12529..12660 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.3.1mRNA_A-nodosum_M_contig9038.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9038 12529..12660 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9038.3.1 ID=prot_A-nodosum_M_contig9038.3.1|Name=mRNA_A-nodosum_M_contig9038.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
VTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006241PSII_cyt_b559_bsu
IPR013081PSII_cyt_b559_N
IPR006216PSII_cyt_b559_CS