mRNA_A-nodosum_M_contig9038.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9038.3.1
Unique NamemRNA_A-nodosum_M_contig9038.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-23
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 VTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            +TRNTNQPVAYPIFTFRWLAIHGLAVPTIFF+GAITSMQFIQR
Sbjct:    1 MTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43
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BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-21
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    7 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            R+TNQPV YPIFTFRWLA+HGLAVPTIFFLG ITSMQFIQR
Sbjct:    3 RSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43
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BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 8.370e-21
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            NTNQP+ YPIFTFRWLAIHGL VPT+FFLGAITSMQFIQR
Sbjct:    5 NTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 84.3 bits (207), Expect = 8.370e-21
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            N NQPV+YPIFTFRWLAIHGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_EMIHU (Cytochrome b559 subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=PSBF_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-20
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            NTNQPVAYPIFTFRWL IH LAVPT+FFLGAITSMQFIQR
Sbjct:    3 NTNQPVAYPIFTFRWLTIHALAVPTVFFLGAITSMQFIQR 42
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BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A0D3M5G8_9STRA (Cytochrome b559 subunit beta n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0D3M5G8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-20
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    7 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            +NTNQPV YPIFTFRWLA+HGLAVPT+FFLG+IT+MQFIQR
Sbjct:    2 QNTNQPVVYPIFTFRWLAVHGLAVPTVFFLGSITAMQFIQR 42
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-20
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    7 RNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            R TNQPV YPIFTFRWLA+HGLA+PT+FFLGAIT+MQFIQR
Sbjct:    3 RGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_PHATC (Cytochrome b559 subunit beta n=81 Tax=cellular organisms TaxID=131567 RepID=PSBF_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-20
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 VTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            + +N NQPVAYPIFTFRWLAIHGLA+PT+FFLG IT+MQFIQR
Sbjct:    1 MAKNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR 43
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: PSBF_GRATL (Cytochrome b559 subunit beta n=77 Tax=Rhodophyta TaxID=2763 RepID=PSBF_GRATL)

HSP 1 Score: 83.6 bits (205), Expect = 1.690e-20
Identity = 34/40 (85.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            N+NQP++YPIFTFRWLAIHG+A+PT+FFLGAITSMQFIQR
Sbjct:    5 NSNQPISYPIFTFRWLAIHGIAIPTVFFLGAITSMQFIQR 44
[Close]
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Match: A0A1C9CFH9_9FLOR (Cytochrome b559 subunit beta n=10 Tax=Florideophyceae TaxID=2806 RepID=A0A1C9CFH9_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 1.690e-20
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR 129
            N NQP++YPIFTFRWLAIHGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NINQPISYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GJY0_COSCS1.030e-2395.35Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A3R5UAF7_9STRA5.760e-2190.24Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A1C9CCM0_9RHOD8.370e-2190.00Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_NEOYE8.370e-2190.00Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]
PSBF_EMIHU1.140e-2092.50Cytochrome b559 subunit beta n=11 Tax=Eukaryota Ta... [more]
A0A0D3M5G8_9STRA1.140e-2085.37Cytochrome b559 subunit beta n=3 Tax=cellular orga... [more]
A0A3R5TZL4_9STRA1.160e-2085.37Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]
PSBF_PHATC1.660e-2081.40Cytochrome b559 subunit beta n=81 Tax=cellular org... [more]
PSBF_GRATL1.690e-2085.00Cytochrome b559 subunit beta n=77 Tax=Rhodophyta T... [more]
A0A1C9CFH9_9FLOR1.690e-2087.50Cytochrome b559 subunit beta n=10 Tax=Florideophyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12529..12660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D1J7D4
Preferred namepsbF
PFAMsCytochrom_B559
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K02708
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue9.77e-24
EggNOG OGs2E87T@1|root,2SEUE@2759|Eukaryota
Descriptionphotosynthetic electron transport chain
Cds size132
COG categoryA
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870350.6490445-CDS-A-nodosum_M_contig9038:12528..126601680870350.6490445-CDS-A-nodosum_M_contig9038:12528..12660Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9038 12529..12660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.3.1prot_A-nodosum_M_contig9038.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9038 12529..12660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9038.3.1

>prot_A-nodosum_M_contig9038.3.1 ID=prot_A-nodosum_M_contig9038.3.1|Name=mRNA_A-nodosum_M_contig9038.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
VTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFLGAITSMQFIQR*
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mRNA from alignment at A-nodosum_M_contig9038:12529..12660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9038.3.1 ID=mRNA_A-nodosum_M_contig9038.3.1|Name=mRNA_A-nodosum_M_contig9038.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12529..12660- (Ascophyllum nodosum dioecious)
GTCACTAGAAATACAAATCAACCAGTAGCCTATCCTATTTTTACGTTTCG
TTGGTTAGCTATCCATGGTTTAGCCGTACCAACGATTTTTTTTTTAGGCG
CAATTACATCAATGCAATTTATTCAAAGATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9038:12529..12660-

>mRNA_A-nodosum_M_contig9038.3.1 ID=mRNA_A-nodosum_M_contig9038.3.1|Name=mRNA_A-nodosum_M_contig9038.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12529..12660- (Ascophyllum nodosum dioecious)
GTCACTAGAAATACAAATCAACCAGTAGCCTATCCTATTTTTACGTTTCG
TTGGTTAGCTATCCATGGTTTAGCCGTACCAACGATTTTTTTTTTAGGCG
CAATTACATCAATGCAATTTATTCAAAGATAG
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