prot_A-nodosum_M_contig9.88.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9.88.2
Unique Nameprot_A-nodosum_M_contig9.88.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length554
Homology
BLAST of mRNA_A-nodosum_M_contig9.88.2 vs. uniprot
Match: D7G9I0_ECTSI (C2H2 zinc finger, ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I0_ECTSI)

HSP 1 Score: 448 bits (1153), Expect = 6.070e-148
Identity = 299/562 (53.20%), Postives = 341/562 (60.68%), Query Frame = 0
Query:    3 VHTRHIIVYNTGPAVGVNEFTLRRVFEAYGLVERVLCPDPAAARVLITFKD-------------------------------------VASAVRAKAERNRPPEVEDRVRRGVPRAAMASEVHAPRPNEPCPLLGRWLKVDYADVRVRHSLKQSTGESGGXXXXATDAIPTIPAFLKDFKALDALATSGAGSRDTRPTPCPLCGRSCGGQRGLRMHLVGAHPLDISDRDHLVRLLEQGRDSSLELGSNRPSVD---KNSDNSDVRLGVDSD--TPTVGAGAAARGRAGDELPPGFAAARTGDMVTLRGLVEV-GWDPATAVDKNGSSPLDWAAGEGRLDAFRRGDKNARPSTNLLHWCGLNPGRACPNRGRGEGRTALHWAARGGHDEVCRLLLETPRPADRRFDSESDNGC-----------SYMSADVAAAXXXXXXXXXXXXXXXXXXXXXXDRGVDHRRVNAYGCNVAHWCGLSGDVDVCRWLARTVERGGAGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----VVPDRAWGQDDGGYTPAQVARLA 505
            + TRH++VYNTGPAVGV+E TLRRVFEAYG VERV CP+PAAARVLI+F +                                     V+SA RA+AERNRPPE+E+RVR GVP AA AS+V AP P EPCPLLGRWLKV +ADVRVRH+          XXXX   A P +P+ L  FKA DALA  G  S D RPTPCPLCGR+CGGQRGLRMHLVGAHPL++ DRDH V+LL++G  S   + +  P  D   + +D+  V    + D   P VG            LPPGFAAAR GD+  L+ LVE  GW+P TA+DKNGSSPLDWAAGEGRL+  R           LLH CG++ G ACP RGRGEGRT                 LETPRP D         G            +++S DV AA                      +RG DHR VNAYGCNVAHWCGLSGDVDVCRWL+R VE GGAGGL       XXXXXXXXXXXXXXXXXXXXXXXXXXXX     VVP RAW +D+GGYTP  VARLA
Sbjct:   64 IQTRHLVVYNTGPAVGVDEVTLRRVFEAYGEVERVCCPNPAAARVLISFHEIHGQMLVRHPVSSRPCPSRTTSGTAAYGGTLAERPDRVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKVSFADVRVRHNGGXXXXXXXXXXXXXXXA-PAVPSHLSGFKAFDALAAGGTASCDARPTPCPLCGRTCGGQRGLRMHLVGAHPLEVKDRDHFVQLLQRGSASLPPMEA--PGTDLATRRNDHDGVGQATEEDGGAPAVGXXXXXXXXXXXXLPPGFAAARAGDLGALKRLVEEEGWEPKTALDKNGSSPLDWAAGEGRLEVCRY----------LLHECGVDAGGACPTRGRGEGRTXXXXXXXXXXXXXXXXXLETPRPVDAAAAVSVVGGGDGTLVSPGGERTFVSPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSRRVEEGGAGGLDWAKTNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVVPRRAWERDEGGYTPEDVARLA 612          
BLAST of mRNA_A-nodosum_M_contig9.88.2 vs. uniprot
Match: A0A6H5K2T6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T6_9PHAE)

HSP 1 Score: 385 bits (989), Expect = 8.010e-124
Identity = 261/541 (48.24%), Postives = 295/541 (54.53%), Query Frame = 0
Query:    3 VHTRHIIVYNTGPAVGVNEFTLRRVFEAYGLVERVLCPDPAAARVLITFKDVASAVRAKAERNRPPEVEDRVRRGVPRAAMASEVHAPRPNEPCPLLGRWLKVDYADVRVRHSLKQSTGESGGXXXXATDAIPTIPAFLKDFKALDALATSGAGSRDTRPTPCPLCGRSCGGQRGLRMHLVGAHPLDISDRDHLVRLLEQGRDS--SLELGSNRPSVDKNSDNSDVRLGVDSD--TPTVGAGAAARGRAGDELPPGFAAARTGDMVTLRGLVEV-GWDPATAVDKNGSSPLDWAAGEGRLDAFRRG-----------------------DKNARPST-----NLLHWCGLNPGRACPNRGRGEGRTALHWAARGGHDEVCRLLLETPRPADRRFDSESDNGCSYMSADVAAAXXXXXXXXXXXXXXXXXXXXXXDRGVDHRRVNAYGCNVAHWCGLSGDVDVCRWLARTVERGGAGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVV-----PDRAWGQDDGGYTPAQVARLA 505
            + TRH++VYNTGP VGV+E TLRRVFEAYG VERV CP+PAAARVLI+F +V+SA RA+AERNRPPE+E+RVR GVP AA AS+V AP P EPCPLLGRWLK   +  R R                    +P     L  FKA DALA  G  S D RPTPCPLCGR+CGGQRGLRMHLVGAHPL++ DR+H V+LL++G  S   +E      +  +N  N  +  G +     P V             L PGFAAAR GD+  L+ LVE  GW P TA+DKNGSSPLDWAAGEGRL+  R                         D  A  S        L   G       P+    EG T LHWA  G H   CRLL E                                                  RG DHR VNAYGCNVAHWCGLSGDVDVCRWL+R VE GG GGL        XXXXXXXXXXXXXXXXXXX       X       P RAW +D+GGYTP  VARLA
Sbjct:  101 IQTRHLVVYNTGPVVGVDEVTLRRVFEAYGEVERVYCPNPAAARVLISFHEVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKAGSSQRRRRR---------------LQGKLPAATRXLSGFKAFDALAAGGTASCDARPTPCPLCGRTCGGQRGLRMHLVGAHPLEVKDRNHFVQLLQRGSASLPPMEAPGTDLATRRNGHNG-IGQGTEEGGGAPAVXXXXXXXXXXXXALLPGFAAARAGDLGALKRLVEEEGWAPKTALDKNGSSPLDWAAGEGRLEVCRTSLXXXXXXXXXXXXXLLLETPRPVDAAAAVSVVGGGDGTLVSPGXXXXXXXPDVTAAEGTTPLHWACWGAHLATCRLLFE--------------------------------------------------RGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSRRVEEGGPGGLDWAKTNLQXXXXXXXXXXXXXXXXXXXLAEQTTSXXXXXXXGPRRAWEKDEGGYTPEDVARLA 575          
BLAST of mRNA_A-nodosum_M_contig9.88.2 vs. uniprot
Match: A0A2R5GK30_9STRA (Ankyrin repeat domain-containing protein 17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK30_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.580e-13
Identity = 67/215 (31.16%), Postives = 82/215 (38.14%), Query Frame = 0
Query:  251 LPPGFAAARTGDMVTLRGLVEVGWDPATAVDKNGSSPLDWAAGEGRLDAFRRGDKNARPSTNLLHWCGLNPGRACPNRGRGEG-RTALHWAARGGHDEVCRLLLETPR-PADRRFDSESDNGCSYM---------------------SADVAAAXXXXXXXXXXXXXXXXXXXXXXDRGVDHRRVNAYGCNVAHWCGLSGDVDVCRWLARTVERG 442
            L P   A R+GD+  LR  V  GWD   AVD+NG++ L WAAG G L+  +           L+H C L+P  A     RG   RTALHWAAR GH +V R L+E    PAD      +   C                        S                            +RGVD  R+N  G    H     G+  VC WL R    G
Sbjct:  435 LGPELDACRSGDLEALRKAVAAGWDAHAAVDRNGANGLLWAAGFGNLEVCKF----------LVHECKLDPVNASQKARRGYSMRTALHWAARNGHMDVVRWLVEDQASPADAVTGDGTTPLCFXXXXXXXXXXXXXXXKAGASPATSNSFGCNLAMWVAQSPQHESALTLCDYLLERGVDFTRINHNGQGCLHKAAQRGNRAVCEWLLRKAGLG 639          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.88.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G9I0_ECTSI6.070e-14853.20C2H2 zinc finger, ankyrin repeat protein n=1 Tax=E... [more]
A0A6H5K2T6_9PHAE8.010e-12448.24C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A2R5GK30_9STRA3.580e-1331.16Ankyrin repeat domain-containing protein 17 n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 332..361
e-value: 0.0015
score: 27.8
coord: 494..523
e-value: 1700.0
score: 3.2
coord: 382..411
e-value: 0.31
score: 20.1
coord: 249..278
e-value: 4000.0
score: 0.5
coord: 455..486
e-value: 980.0
score: 5.1
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 310..410
e-value: 7.7E-11
score: 42.4
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 382..414
score: 9.27054
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 332..354
score: 10.36565
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 248..530
e-value: 1.8E-37
score: 130.9
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 255..516
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..72
e-value: 2.9E-6
score: 28.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..246
NoneNo IPR availablePANTHERPTHR24189MYOTROPHINcoord: 256..478
coord: 327..521
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 382..408
score: 8.773161
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 332..354
score: 10.338512
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 165..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:1646816..1654865 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.88.2mRNA_A-nodosum_M_contig9.88.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9 1646712..1655318 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9.88.2 ID=prot_A-nodosum_M_contig9.88.2|Name=mRNA_A-nodosum_M_contig9.88.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=554bp
MKVHTRHIIVYNTGPAVGVNEFTLRRVFEAYGLVERVLCPDPAAARVLIT
FKDVASAVRAKAERNRPPEVEDRVRRGVPRAAMASEVHAPRPNEPCPLLG
RWLKVDYADVRVRHSLKQSTGESGGSSGGATDAIPTIPAFLKDFKALDAL
ATSGAGSRDTRPTPCPLCGRSCGGQRGLRMHLVGAHPLDISDRDHLVRLL
EQGRDSSLELGSNRPSVDKNSDNSDVRLGVDSDTPTVGAGAAARGRAGDE
LPPGFAAARTGDMVTLRGLVEVGWDPATAVDKNGSSPLDWAAGEGRLDAF
RRGDKNARPSTNLLHWCGLNPGRACPNRGRGEGRTALHWAARGGHDEVCR
LLLETPRPADRRFDSESDNGCSYMSADVAAAEGTTSFHWAAWGAHLSTCQ
LLLDRGVDHRRVNAYGCNVAHWCGLSGDVDVCRWLARTVERGGAGGLDWA
KTNSQGHTICHKAALKGHKALLEWLRRQTEAGVVPDRAWGQDDGGYTPAQ
VARLAGHVDLAEWLEETEIGVAKTEQDSGDGLAACLVDPLIRRFTTPGSV
CVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR013087Znf_C2H2_type