prot_A-nodosum_M_contig9.72.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9.72.1
Unique Nameprot_A-nodosum_M_contig9.72.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length191
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9.72.1 vs. uniprot
Match: D7G9H3_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9H3_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.560e-32
Identity = 84/156 (53.85%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:   49 GDYGANG-DYGGGIRRGDFMDQQPQQDNGEMAP---NGFDTGVGFQPDHMGYATLGEPSGGGGG---------MGEMPAPEDIEPSALDEFMEGWQASLEEKAAIEAEAKXXXXXXXXXXXXXXXXXXXXXXXSKMIRNREQEQVFLEQLEGELES 191
            G+YGA G DYG         DQQP   NGE+A     GFD G+GFQ D+MGYATL +PSGG            MG MPAPED+EPSALDEFME WQA L EKA IEAEAK                       +KM +NREQEQ+FLEQLEGELES
Sbjct:   28 GEYGATGGDYGXXXXXXXXFDQQP---NGEVAQANGTGFDNGMGFQQDNMGYATLDDPSGGSXXXXXXXXMPDMG-MPAPEDVEPSALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQIFLEQLEGELES 179
[Close]
BLAST of mRNA_A-nodosum_M_contig9.72.1 vs. uniprot
Match: A0A835YIR5_9STRA (Clathrin light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.840e-9
Identity = 55/143 (38.46%), Postives = 66/143 (46.15%), Query Frame = 0 
Query:   50 DYGANGDY-GGGIRRGDFMDQQPQQDNGEMAPNGFDTGVGFQPDHMGYATLGEPSGGGGGMGEMPAPEDIEPSALDEFMEGWQASLEEKAAIEAEAKXXXXXXXXXXXXXXXXXXXXXXXSKMIRNREQEQVFLEQLEGELES 191
            D+G  GDY GGG + G   D Q QQD G+              D M  A  G  S G      MPAPE++  +AL  FM  W+A L+EKA  E  AK                       ++M  NR QEQVFLEQLE +LES
Sbjct:   31 DFG--GDYVGGGYKGGGAEDYQQQQDAGQYGS--------LDGDEMNPAEDG--SNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLES 161
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.72.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9H3_ECTSI2.560e-3253.85Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YIR5_9STRA4.840e-938.46Clathrin light chain n=1 Tax=Tribonema minus TaxID... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..122
IPR000996Clathrin light chainPFAMPF01086Clathrin_lg_chcoord: 75..188
e-value: 1.5E-6
score: 28.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:1440353..1451093 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.72.1mRNA_A-nodosum_M_contig9.72.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9 1440351..1451093 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9.72.1 ID=prot_A-nodosum_M_contig9.72.1|Name=mRNA_A-nodosum_M_contig9.72.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=191bp
ESGSSARKNSSGERWIRVLTSSEGRWMQSGRKAQQEKALMRRLHRHRRGD
YGANGDYGGGIRRGDFMDQQPQQDNGEMAPNGFDTGVGFQPDHMGYATLG
EPSGGGGGMGEMPAPEDIEPSALDEFMEGWQASLEEKAAIEAEAKEAALE
AAKADLETHALERAEKKESKMIRNREQEQVFLEQLEGELES
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain