prot_A-nodosum_M_contig899.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig899.3.1
Unique Nameprot_A-nodosum_M_contig899.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length102
Homology
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-7
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 0
Query:   10 SNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGN-MDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQRTHLIV 102
            S+++  WIADSGAS H++     + + +P    RE + I + + I+VE VGN +  +F GK     T+ +V YVP  G NL+S+ A      +V
Sbjct:    4 SDKSVAWIADSGASEHISFHKEWLQDFKPIETKRE-LRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGYVV 96          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2I0VA70_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VA70_9ASPA)

HSP 1 Score: 53.9 bits (128), Expect = 3.060e-6
Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 0
Query:    3 AFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLH 93
            A +  S S+    W  DSGA+ H+T D T + N +P   G   +T+G+ +++ ++  GN   +    G+ +++ L++  VPNL FNL S+H
Sbjct:  164 ALLTSSNSSNPSEWYLDSGATTHLTADPTYVQNAQPYH-GTSQVTLGNGQQVPIKNTGN-GFLPTPSGNLKLSHLNL--VPNLSFNLLSVH 250          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5E4GDL5_PRUDU (PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDL5_PRUDU)

HSP 1 Score: 53.1 bits (126), Expect = 5.720e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   13 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 97
            +D+WIADSGAS HMT+  + M N+ P   G +TI IG+   +S+ ++G   +         + L  + +VP L  NL S++ + +
Sbjct:   11 DDLWIADSGASHHMTNTLSNMTNIAPYTSG-DTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCK 87          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: UPI001004D4DF (uncharacterized protein LOC114075566 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D4DF)

HSP 1 Score: 53.1 bits (126), Expect = 6.310e-6
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0
Query:   10 SNENDVWIADSGASCHMTHDGTRMYNVRP--PPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAV 95
            S+++ +WI DSGA  HMTHD   ++N+ P   P     + + +  RI V   G+++++         T++DV +VP+   NL S+H +
Sbjct:  368 SSKSIIWILDSGAFEHMTHDSKLLFNIHPLLTPV---FVNLPNSERIKVTQAGSVNIL------PNFTVVDVLFVPSFRCNLLSVHKI 446          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5E4FW64_PRUDU (PREDICTED: Retrovirus-related Pol poly from n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FW64_PRUDU)

HSP 1 Score: 53.1 bits (126), Expect = 6.380e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   13 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 97
            +D+WIADSGAS HMT+  + M N+ P   G +TI IG+   +S+ ++G   +         + L  + +VP L  NL S++ + +
Sbjct:   11 DDLWIADSGASHHMTNTLSNMTNIAPYTSG-DTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCK 87          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A0J7K744_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K744_LASNI)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 0
Query:    4 FVVQSGSNENDVWIADSGASCHMTHDGTR--MYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGD-QRITLLDVAYVPNLGFNLYSL 92
            ++ +    E D W+ADSGAS HMT       MY   P P   + + +G++  I     G ++V    KG   R  LLDV YVP +G NL+S+
Sbjct:  289 YIFEDSIVEQDAWLADSGASTHMTSCEKHFVMYEAFPTP---KAVQVGNKDVILAYGKGAINVEMKIKGIWYRNHLLDVWYVPKIGRNLFSI 377          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A0J7KFP4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFP4_LASNI)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-5
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 0
Query:   11 NENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRIT---LLDVAYVPNLGFNLYSLHA 94
            N  DVW+ADSGAS HMT        +         +T+G+ + I    +G  ++ F  +   +IT   + DV YVP++  NL+SL A
Sbjct:  163 NNKDVWLADSGASDHMTSREEWFTKLESVGDRERPVTLGNNKVIFA--IGKGEIQFEARVADKITKYTMADVLYVPDISRNLFSLGA 247          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5K0Y1U5_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y1U5_9MAGN)

HSP 1 Score: 51.6 bits (122), Expect = 2.320e-5
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0
Query:   13 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAV 95
            N  W+ADSGAS HMT D  ++ N +    G + + IG+ + + + + G  +++ HG     I L  V YVP L  NL S+  +
Sbjct:  347 NAEWLADSGASSHMTGDAGKISN-KSIYHGSDRVIIGNGKSLPITHTGQGNLVVHGS---YIPLSKVLYVPQLKKNLLSVSQI 425          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2I0VA55_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VA55_9ASPA)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-5
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0
Query:    1 HSAFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLH 93
            +SA    + S+    W  DSGAS H+T D +   +  P   G   + IG+ + + +   G   ++   +G  R++LL +  VPNL FNL S+H
Sbjct:  327 NSALYTSTASSPQQDWFLDSGASSHLTSDSSHFQSTHPYT-GTNQVIIGNGQSLPIHSTGK-GILPTPQGTIRLSLLHL--VPNLSFNLLSVH 415          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2P6RCF4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RCF4_ROSCH)

HSP 1 Score: 51.2 bits (121), Expect = 3.170e-5
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0
Query:   10 SNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 97
            S  N+VWI D+GA+ HMT D  R   +  P    ++ITIG+   + ++++G+  +      D    L +V +VP+L  NL S + + +
Sbjct:   21 SQVNEVWIGDTGATHHMTSD-LRNLTIAHPFESSKSITIGNGEGLHIKHIGSAIIT---PADHTFKLNNVLHVPHLAVNLLSFNKLCK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A3S4Q8K1_9ACAR2.150e-736.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0VA70_9ASPA3.060e-632.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E4GDL5_PRUDU5.720e-634.12PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis T... [more]
UPI001004D4DF6.310e-631.82uncharacterized protein LOC114075566 n=1 Tax=Solan... [more]
A0A5E4FW64_PRUDU6.380e-634.12PREDICTED: Retrovirus-related Pol poly from n=1 Ta... [more]
A0A0J7K744_LASNI1.230e-536.96Retrovirus-related pol polyprotein from transposon... [more]
A0A0J7KFP4_LASNI2.230e-534.48Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A5K0Y1U5_9MAGN2.320e-534.94Integrase catalytic domain-containing protein (Fra... [more]
A0A2I0VA55_9ASPA2.340e-532.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6RCF4_ROSCH3.170e-531.82Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig899contigA-nodosum_M_contig899:199900..200205 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig899.3.1mRNA_A-nodosum_M_contig899.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig899 199900..200205 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig899.3.1 ID=prot_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
HSAFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGD
RRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQRTHL
IV
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