mRNA_A-nodosum_M_contig899.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR) HSP 1 Score: 57.4 bits (137), Expect = 2.150e-7 Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 28 SNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGN-MDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQRTHLIV 306
S+++ WIADSGAS H++ + + +P RE + I + + I+VE VGN + +F GK T+ +V YVP G NL+S+ A +V
Sbjct: 4 SDKSVAWIADSGASEHISFHKEWLQDFKPIETKRE-LRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGYVV 96
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2I0VA70_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VA70_9ASPA) HSP 1 Score: 53.9 bits (128), Expect = 3.060e-6 Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 7 AFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLH 279
A + S S+ W DSGA+ H+T D T + N +P G +T+G+ +++ ++ GN + G+ +++ L++ VPNL FNL S+H
Sbjct: 164 ALLTSSNSSNPSEWYLDSGATTHLTADPTYVQNAQPYH-GTSQVTLGNGQQVPIKNTGN-GFLPTPSGNLKLSHLNL--VPNLSFNLLSVH 250
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5E4GDL5_PRUDU (PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDL5_PRUDU) HSP 1 Score: 53.1 bits (126), Expect = 5.720e-6 Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 37 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 291
+D+WIADSGAS HMT+ + M N+ P G +TI IG+ +S+ ++G + + L + +VP L NL S++ + +
Sbjct: 11 DDLWIADSGASHHMTNTLSNMTNIAPYTSG-DTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCK 87
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: UPI001004D4DF (uncharacterized protein LOC114075566 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D4DF) HSP 1 Score: 53.1 bits (126), Expect = 6.310e-6 Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 28 SNENDVWIADSGASCHMTHDGTRMYNVRP--PPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAV 285
S+++ +WI DSGA HMTHD ++N+ P P + + + RI V G+++++ T++DV +VP+ NL S+H +
Sbjct: 368 SSKSIIWILDSGAFEHMTHDSKLLFNIHPLLTPV---FVNLPNSERIKVTQAGSVNIL------PNFTVVDVLFVPSFRCNLLSVHKI 446
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5E4FW64_PRUDU (PREDICTED: Retrovirus-related Pol poly from n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FW64_PRUDU) HSP 1 Score: 53.1 bits (126), Expect = 6.380e-6 Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 37 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 291
+D+WIADSGAS HMT+ + M N+ P G +TI IG+ +S+ ++G + + L + +VP L NL S++ + +
Sbjct: 11 DDLWIADSGASHHMTNTLSNMTNIAPYTSG-DTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCK 87
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A0J7K744_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K744_LASNI) HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5 Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 1
Query: 10 FVVQSGSNENDVWIADSGASCHMTHDGTR--MYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGD-QRITLLDVAYVPNLGFNLYSL 276
++ + E D W+ADSGAS HMT MY P P + + +G++ I G ++V KG R LLDV YVP +G NL+S+
Sbjct: 289 YIFEDSIVEQDAWLADSGASTHMTSCEKHFVMYEAFPTP---KAVQVGNKDVILAYGKGAINVEMKIKGIWYRNHLLDVWYVPKIGRNLFSI 377
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A0J7KFP4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFP4_LASNI) HSP 1 Score: 51.6 bits (122), Expect = 2.230e-5 Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 31 NENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRIT---LLDVAYVPNLGFNLYSLHA 282
N DVW+ADSGAS HMT + +T+G+ + I +G ++ F + +IT + DV YVP++ NL+SL A
Sbjct: 163 NNKDVWLADSGASDHMTSREEWFTKLESVGDRERPVTLGNNKVIFA--IGKGEIQFEARVADKITKYTMADVLYVPDISRNLFSLGA 247
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5K0Y1U5_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y1U5_9MAGN) HSP 1 Score: 51.6 bits (122), Expect = 2.320e-5 Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 37 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAV 285
N W+ADSGAS HMT D ++ N + G + + IG+ + + + + G +++ HG I L V YVP L NL S+ +
Sbjct: 347 NAEWLADSGASSHMTGDAGKISN-KSIYHGSDRVIIGNGKSLPITHTGQGNLVVHGS---YIPLSKVLYVPQLKKNLLSVSQI 425
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2I0VA55_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VA55_9ASPA) HSP 1 Score: 51.6 bits (122), Expect = 2.340e-5 Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 1 HSAFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLH 279
+SA + S+ W DSGAS H+T D + + P G + IG+ + + + G ++ +G R++LL + VPNL FNL S+H
Sbjct: 327 NSALYTSTASSPQQDWFLDSGASSHLTSDSSHFQSTHPYT-GTNQVIIGNGQSLPIHSTGK-GILPTPQGTIRLSLLHL--VPNLSFNLLSVH 415
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A6P5SG96_PRUAV (uncharacterized protein LOC110758400 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5SG96_PRUAV) HSP 1 Score: 50.8 bits (120), Expect = 4.050e-5 Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 1
Query: 34 ENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 291
+ + WIADSGA+ HMT D + + +V P P ETI + I + ++G +I H L V +VP + NL SL+ + +
Sbjct: 368 QQEYWIADSGATNHMTADISNI-SVAAPYPTNETIATANGAGIHIAHIGKSSLITH---THSFALNSVLHVPQISANLLSLNQLCK 449 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig899.3.1 >prot_A-nodosum_M_contig899.3.1 ID=prot_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp HSAFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDback to top mRNA from alignment at A-nodosum_M_contig899:199900..200205- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig899.3.1 ID=mRNA_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig899:199900..200205- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig899:199900..200205- >mRNA_A-nodosum_M_contig899.3.1 ID=mRNA_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig899:199900..200205- (Ascophyllum nodosum dioecious)back to top |