mRNA_A-nodosum_M_contig899.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig899.3.1
Unique NamemRNA_A-nodosum_M_contig899.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-7
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   28 SNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGN-MDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQRTHLIV 306
            S+++  WIADSGAS H++     + + +P    RE + I + + I+VE VGN +  +F GK     T+ +V YVP  G NL+S+ A      +V
Sbjct:    4 SDKSVAWIADSGASEHISFHKEWLQDFKPIETKRE-LRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGYVV 96          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2I0VA70_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VA70_9ASPA)

HSP 1 Score: 53.9 bits (128), Expect = 3.060e-6
Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    7 AFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLH 279
            A +  S S+    W  DSGA+ H+T D T + N +P   G   +T+G+ +++ ++  GN   +    G+ +++ L++  VPNL FNL S+H
Sbjct:  164 ALLTSSNSSNPSEWYLDSGATTHLTADPTYVQNAQPYH-GTSQVTLGNGQQVPIKNTGN-GFLPTPSGNLKLSHLNL--VPNLSFNLLSVH 250          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5E4GDL5_PRUDU (PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDL5_PRUDU)

HSP 1 Score: 53.1 bits (126), Expect = 5.720e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   37 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 291
            +D+WIADSGAS HMT+  + M N+ P   G +TI IG+   +S+ ++G   +         + L  + +VP L  NL S++ + +
Sbjct:   11 DDLWIADSGASHHMTNTLSNMTNIAPYTSG-DTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCK 87          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: UPI001004D4DF (uncharacterized protein LOC114075566 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D4DF)

HSP 1 Score: 53.1 bits (126), Expect = 6.310e-6
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   28 SNENDVWIADSGASCHMTHDGTRMYNVRP--PPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAV 285
            S+++ +WI DSGA  HMTHD   ++N+ P   P     + + +  RI V   G+++++         T++DV +VP+   NL S+H +
Sbjct:  368 SSKSIIWILDSGAFEHMTHDSKLLFNIHPLLTPV---FVNLPNSERIKVTQAGSVNIL------PNFTVVDVLFVPSFRCNLLSVHKI 446          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5E4FW64_PRUDU (PREDICTED: Retrovirus-related Pol poly from n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FW64_PRUDU)

HSP 1 Score: 53.1 bits (126), Expect = 6.380e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   37 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 291
            +D+WIADSGAS HMT+  + M N+ P   G +TI IG+   +S+ ++G   +         + L  + +VP L  NL S++ + +
Sbjct:   11 DDLWIADSGASHHMTNTLSNMTNIAPYTSG-DTIKIGNGEGLSISHIGTASL-------SGLHLNTIYHVPQLATNLLSVYQLCK 87          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A0J7K744_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K744_LASNI)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   10 FVVQSGSNENDVWIADSGASCHMTHDGTR--MYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGD-QRITLLDVAYVPNLGFNLYSL 276
            ++ +    E D W+ADSGAS HMT       MY   P P   + + +G++  I     G ++V    KG   R  LLDV YVP +G NL+S+
Sbjct:  289 YIFEDSIVEQDAWLADSGASTHMTSCEKHFVMYEAFPTP---KAVQVGNKDVILAYGKGAINVEMKIKGIWYRNHLLDVWYVPKIGRNLFSI 377          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A0J7KFP4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFP4_LASNI)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-5
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1
Query:   31 NENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRIT---LLDVAYVPNLGFNLYSLHA 282
            N  DVW+ADSGAS HMT        +         +T+G+ + I    +G  ++ F  +   +IT   + DV YVP++  NL+SL A
Sbjct:  163 NNKDVWLADSGASDHMTSREEWFTKLESVGDRERPVTLGNNKVIFA--IGKGEIQFEARVADKITKYTMADVLYVPDISRNLFSLGA 247          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A5K0Y1U5_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y1U5_9MAGN)

HSP 1 Score: 51.6 bits (122), Expect = 2.320e-5
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   37 NDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAV 285
            N  W+ADSGAS HMT D  ++ N +    G + + IG+ + + + + G  +++ HG     I L  V YVP L  NL S+  +
Sbjct:  347 NAEWLADSGASSHMTGDAGKISN-KSIYHGSDRVIIGNGKSLPITHTGQGNLVVHGS---YIPLSKVLYVPQLKKNLLSVSQI 425          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A2I0VA55_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VA55_9ASPA)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-5
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 HSAFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLH 279
            +SA    + S+    W  DSGAS H+T D +   +  P   G   + IG+ + + +   G   ++   +G  R++LL +  VPNL FNL S+H
Sbjct:  327 NSALYTSTASSPQQDWFLDSGASSHLTSDSSHFQSTHPYT-GTNQVIIGNGQSLPIHSTGK-GILPTPQGTIRLSLLHL--VPNLSFNLLSVH 415          
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Match: A0A6P5SG96_PRUAV (uncharacterized protein LOC110758400 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5SG96_PRUAV)

HSP 1 Score: 50.8 bits (120), Expect = 4.050e-5
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 1
Query:   34 ENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGDRRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQR 291
            + + WIADSGA+ HMT D + + +V  P P  ETI   +   I + ++G   +I H        L  V +VP +  NL SL+ + +
Sbjct:  368 QQEYWIADSGATNHMTADISNI-SVAAPYPTNETIATANGAGIHIAHIGKSSLITH---THSFALNSVLHVPQISANLLSLNQLCK 449          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig899.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A3S4Q8K1_9ACAR2.150e-736.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0VA70_9ASPA3.060e-632.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E4GDL5_PRUDU5.720e-634.12PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis T... [more]
UPI001004D4DF6.310e-631.82uncharacterized protein LOC114075566 n=1 Tax=Solan... [more]
A0A5E4FW64_PRUDU6.380e-634.12PREDICTED: Retrovirus-related Pol poly from n=1 Ta... [more]
A0A0J7K744_LASNI1.230e-536.96Retrovirus-related pol polyprotein from transposon... [more]
A0A0J7KFP4_LASNI2.230e-534.48Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A5K0Y1U5_9MAGN2.320e-534.94Integrase catalytic domain-containing protein (Fra... [more]
A0A2I0VA55_9ASPA2.340e-532.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P5SG96_PRUAV4.050e-533.72uncharacterized protein LOC110758400 n=1 Tax=Prunu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig899contigA-nodosum_M_contig899:199900..200205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5270.UM05425P0
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size306
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.88e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3V2N5@5204|Basidiomycota
DescriptionRetrotransposon gag protein
Cds size306
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.381441-CDS-A-nodosum_M_contig899:199899..2002051680870331.381441-CDS-A-nodosum_M_contig899:199899..200205Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig899 199900..200205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig899.3.1prot_A-nodosum_M_contig899.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig899 199900..200205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig899.3.1

>prot_A-nodosum_M_contig899.3.1 ID=prot_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
HSAFVVQSGSNENDVWIADSGASCHMTHDGTRMYNVRPPPPGRETITIGD
RRRISVEYVGNMDVIFHGKGDQRITLLDVAYVPNLGFNLYSLHAVQRTHL
IV
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mRNA from alignment at A-nodosum_M_contig899:199900..200205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig899.3.1 ID=mRNA_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig899:199900..200205- (Ascophyllum nodosum dioecious)
CACAGTGCGTTTGTAGTGCAGTCGGGCAGCAACGAGAATGATGTTTGGAT TGCCGACAGCGGCGCGTCGTGTCATATGACGCATGACGGGACAAGGATGT ATAATGTGAGGCCCCCTCCGCCCGGTCGCGAAACAATCACGATCGGGGAC CGTCGGAGAATCAGTGTAGAGTATGTCGGGAATATGGATGTCATTTTCCA TGGAAAGGGTGATCAGAGAATCACATTGCTTGATGTCGCGTACGTACCAA ATTTAGGGTTTAACCTGTACTCGCTGCACGCTGTCCAGAGAACACATCTG ATAGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig899:199900..200205-

>mRNA_A-nodosum_M_contig899.3.1 ID=mRNA_A-nodosum_M_contig899.3.1|Name=mRNA_A-nodosum_M_contig899.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig899:199900..200205- (Ascophyllum nodosum dioecious)
CACAGTGCGTTTGTAGTGCAGTCGGGCAGCAACGAGAATGATGTTTGGAT
TGCCGACAGCGGCGCGTCGTGTCATATGACGCATGACGGGACAAGGATGT
ATAATGTGAGGCCCCCTCCGCCCGGTCGCGAAACAATCACGATCGGGGAC
CGTCGGAGAATCAGTGTAGAGTATGTCGGGAATATGGATGTCATTTTCCA
TGGAAAGGGTGATCAGAGAATCACATTGCTTGATGTCGCGTACGTACCAA
ATTTAGGGTTTAACCTGTACTCGCTGCACGCTGTCCAGAGAACACATCTG
ATAGTG
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