prot_A-nodosum_M_contig8977.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8977.1.1
Unique Nameprot_A-nodosum_M_contig8977.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length184
Homology
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-7
Identity = 34/117 (29.06%), Postives = 65/117 (55.56%), Query Frame = 0
Query:   11 MMEVDRLAADLHRLANKSVTELRKCVIIVSGLSADFEMECRILENNPAGLNRAEIERVVVNQYNRLLRQQQDSKALSASKGNVTANREKGKNRRLHHKFDGKCFNCGKKGHRAVDCR 127
            MM+ D+L  ++  + +  + +    VI++  L  DF+   RILE+ P G++    +  +  ++ R+  ++    AL A++G ++  + +     L  +F+GKCF CGK+GHR  +CR
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECR 118          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645)

HSP 1 Score: 57.8 bits (138), Expect = 1.520e-6
Identity = 41/109 (37.61%), Postives = 53/109 (48.62%), Query Frame = 0
Query:   87 SASKGNVTANREKGKNRRLHHK-FDGKCFNCGKKGHRAVDCRSAKKKSEKSGA-------TDDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV 183
            +A K N    R  GK +  + K F G C+NCGK GH+A DCR+ KK  EK+          DD      EC   G  +EW LDSGAT H+   +   + Y  A P   +
Sbjct:  236 AAPKKNNKRKRHSGKEKNPNKKKFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEEL 344          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: F0X119_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X119_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.600e-6
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 0
Query:   36 VIIVSGLSADFEMECRILENNPAGLNRAEIERVVVNQYNRLLRQQQDSKALSASKGNVTANREKGKNRRLHHKFDGKCFNCGKKGHRAVDCRSAK--KKSEKSGATDDRKECGGSGRKEEWELDSGATFHM 164
            ++++   S D++   +I+ENN  G++    + ++  +Y R +R+++   AL  ++   ++   K K  ++ H F GK FNCGK GHR VDCR  +     EK     D    G       W LDSGA+ HM
Sbjct:   17 MMLLGSFSNDYDNIVKIIENNQ-GMDSFRTKEMLNREYERSIRKEKSQSALKTTRKMDSSGARKQK--QIDHGFQGKFFNCGKDGHRKVDCRKNRIIPSDEKEFTCSDGSHGG-------WILDSGASSHM 137          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G3BHX0_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BHX0_CAPCH)

HSP 1 Score: 55.5 bits (132), Expect = 1.010e-5
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 0
Query:   77 LRQQQDSKALSA-SKGNVTANR----EKGKNR-----RLHH-------KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKA 177
            LR ++D+KA +  SKGN T N     E G+N+     ++ H       KF GKCFNCGK GH++ DCR++KK  +K  A         DD      EC   G   EW +DSGAT H+   +   S++  A
Sbjct:  492 LRIEEDNKAAARRSKGNSTMNGAHNVEDGQNKSKKRKKVDHGSNQPKKKFKGKCFNCGKIGHKSTDCRASKKDKKKGQANMIESNKEYDDLCAMFTECNLVGNPHEWWMDSGATRHICANKELFSSFAPA 621          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G3A7J8_CAPAN (Chlorophyll a-b binding protein, chloroplastic n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G3A7J8_CAPAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.380e-5
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 0
Query:  108 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKA 177
            KF GKCFNCGK GH++ DCR+ KK+ +K  A         DD      EC  +G   EW +DSGAT H+   +   S +  A
Sbjct:  137 KFKGKCFNCGKIGHKSTDCRAPKKEKKKDQANMIESNKECDDLCAMFSECNLTGNPSEWWMDSGATRHVCANKELFSLFASA 218          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2W247_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W247_CAPBA)

HSP 1 Score: 53.5 bits (127), Expect = 5.310e-5
Identity = 49/130 (37.69%), Postives = 63/130 (48.46%), Query Frame = 0
Query:   77 LRQQQDSKALSA-SKGNVTANR----EKGKN-----RRLHH-------KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKA 177
            LR ++D+KA    SKGN T N     E G+N     + + H       KF GKCFNCGK GH++ DCR+ KK  +K  A         DD      EC   G    W +DSGAT H+  ++   S Y  A
Sbjct:  691 LRIEEDNKAAERRSKGNSTMNGAHIVEDGQNNSKKRKNVEHGSNHPKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPA 820          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2VDA6_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VDA6_CAPBA)

HSP 1 Score: 52.8 bits (125), Expect = 9.480e-5
Identity = 34/82 (41.46%), Postives = 42/82 (51.22%), Query Frame = 0
Query:  108 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKA 177
            KF GKCFNCGK GH++ DCR+ KK  +K  A         DD      EC   G    W +DSGAT H+  ++   S Y  A
Sbjct:  263 KFKGKCFNCGKIGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATHHVCESKELFSTYAPA 344          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
F0W6E8_9STRA1.890e-729.06Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
UPI001F43F6451.520e-637.61hypothetical protein n=1 Tax=Corynebacterium parak... [more]
F0X119_9STRA5.600e-632.06Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A2G3BHX0_CAPCH1.010e-537.69Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
A0A2G3A7J8_CAPAN3.380e-541.46Chlorophyll a-b binding protein, chloroplastic n=2... [more]
A0A2G2W247_CAPBA5.310e-537.69Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2VDA6_CAPBA9.480e-541.46Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 112..128
e-value: 1.2E-4
score: 31.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 111..127
e-value: 3.0E-6
score: 27.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 112..128
score: 10.410928
NoneNo IPR availableGENE3D4.10.60.10coord: 100..137
e-value: 9.3E-6
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..159
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 100..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8977contigA-nodosum_M_contig8977:7154..7897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8977.1.1mRNA_A-nodosum_M_contig8977.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8977 7067..8098 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8977.1.1 ID=prot_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp
MEPGSDPFKFMMEVDRLAADLHRLANKSVTELRKCVIIVSGLSADFEMEC
RILENNPAGLNRAEIERVVVNQYNRLLRQQQDSKALSASKGNVTANREKG
KNRRLHHKFDGKCFNCGKKGHRAVDCRSAKKKSEKSGATDDRKECGGSGR
KEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf