mRNA_A-nodosum_M_contig8977.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645) HSP 1 Score: 75.5 bits (184), Expect = 9.080e-12 Identity = 56/177 (31.64%), Postives = 89/177 (50.28%), Query Frame = 1
Query: 346 SASKGNVTANREKGKNRRLHHK-FDGKCFNCGKKGHRAVDCRSAKKKSEKSGA-------TDDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
+A K N R GK + + K F G C+NCGK GH+A DCR+ KK EK+ DD EC G +EW LDSGAT H+ + + Y A P + + + V+G+G++ + + + K++ +++V +VP + +NL+S V+ G + +K VL
Sbjct: 236 AAPKKNNKRKRHSGKEKNPNKKKFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKMT----SGKVLTLNNVMHVPSIRKNLVSAALLVKN-GFKCVLVSDKFVL 407
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A0J7K4F4_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4F4_LASNI) HSP 1 Score: 75.1 bits (183), Expect = 1.610e-11 Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 1
Query: 409 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGATDD---RKECGGS--GRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
KFDGKCFNC K GHR+ DCRS KKKS+K+ +DD C + E W LDS AT HM + + K A+ + + G + ++L R K++K++++ YVP L NLLS V V + G + + +N+A +
Sbjct: 230 KFDGKCFNCDKIGHRSRDCRS-KKKSDKAANSDDVLTAIACNAELIRKSESWCLDSSATRHMCNDKQKFEVINKDEQSRVYTAAEHYVKSIK-TGNVSLNLKANQRENKVIKLENILYVPELRNNLLS-VPTVTERGYNVTFNKNRAYI 375
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2W247_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W247_CAPBA) HSP 1 Score: 74.7 bits (182), Expect = 2.570e-11 Identity = 63/183 (34.43%), Postives = 92/183 (50.27%), Query Frame = 1
Query: 316 LRQQQDSKALSA-SKGNVTANR----EKGKN-----RRLHH-------KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
LR ++D+KA SKGN T N E G+N + + H KF GKCFNCGK GH++ DCR+ KK +K A DD EC G W +DSGAT H+ ++ S Y A + +A+ V+G G++ + + + K++ +++V YVP L RNL+S
Sbjct: 691 LRIEEDNKAAERRSKGNSTMNGAHIVEDGQNNSKKRKNVEHGSNHPKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 869
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2X5Y1_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X5Y1_CAPBA) HSP 1 Score: 74.3 bits (181), Expect = 3.290e-11 Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 409 KFDGKCFNCGKKGHRAVDCRSAKK--KSEKSGATDDRK----------ECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
KF GKCFNCGK GH++ DCR+ KK K +++ + K EC G W +DSGAT H+ ++ S Y A + +A+ V+G G++ + + + K++ +++V YVP L RNL+S
Sbjct: 28 KFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDNLCAMFTECNMVGNPRAWWMDSGATLHVCASKELFSTYAPAQAEETIYMANSTTAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 158
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2VDA6_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VDA6_CAPBA) HSP 1 Score: 73.9 bits (180), Expect = 4.440e-11 Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query: 409 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
KF GKCFNCGK GH++ DCR+ KK +K A DD EC G W +DSGAT H+ ++ S Y A + +A+ V+G G++ + + + K++ +++V YVP L RNL+S
Sbjct: 263 KFKGKCFNCGKIGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATHHVCESKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 393
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2V5Q5_CAPBA (Geraniol 8-hydroxylase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V5Q5_CAPBA) HSP 1 Score: 72.8 bits (177), Expect = 1.030e-10 Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query: 409 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
KF GKCFNCGK GH++ DCR+ KK +K A DD EC G W +DSGAT H+ ++ S Y A + +A+ V+G G++ + + + K++ +++V YVP L RNL+S
Sbjct: 704 KFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 834
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A0J8B0L4_BETVV (CCHC-type domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0L4_BETVV) HSP 1 Score: 65.9 bits (159), Expect = 2.360e-9 Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 418 GKCFNCGKKGHRAVDCRSAKKKSEKSGATDDRKECGGSGRK-----EEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
G+CFNCGK+GH A DCRS KKK E+S +TD+ G + E +DSGA+ HM+ + +S + + + ADG + G G ++V GR K V + DV YVP L NLLS
Sbjct: 64 GRCFNCGKRGHFAKDCRSPKKK-EESSSTDELAFVAGDQEELYAVAESCYVDSGASRHMTGNKGLLSNFVELLDAVKIVTADGRTICGIGTGDMKV-----GRG-KTVTLKDVLYVPDLKMNLLS 181
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A438HJC7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HJC7_VITVI) HSP 1 Score: 67.8 bits (164), Expect = 3.440e-9 Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query: 409 KFDGKCFNCGKKGHRAVDCRSAKK-KSEKSGATDDRK---------------ECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
KF GKC+NCGK GH++ DCR KK K ++ T+ K EC G +EW +D+GAT H+ + S YK + + + + V+G G++ + + + K + ++DV +VP + +NL+S + + G L++ +K VL
Sbjct: 246 KFKGKCYNCGKTGHKSNDCRKPKKEKKPQANVTEFDKLSNDVSEMNLSDVVSECNIVGNTKEWWVDTGATRHICSNKLMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMT----SGKELTLNDVLHVPDIRKNLVSG-SLLSKNGFKLVFVSDKFVL 400
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A438CSS8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CSS8_VITVI) HSP 1 Score: 67.4 bits (163), Expect = 5.590e-9 Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query: 409 KFDGKCFNCGKKGHRAVDCRSAKK-KSEKSGATDDRK---------------ECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
KF GKC+NCGK GH++ DCR KK K ++ T+ K EC G +EW +D+GAT H+ + S YK + + + + V+G G++ + + + K + ++DV +VP + +NL+S + + G L++ +K VL
Sbjct: 246 KFKGKCYNCGKTGHKSNDCRKPKKEKKPQANVTEFDKLSNDVFEMNLSAVVSECNIVGNTKEWWVDTGATCHICSNKWMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMT----SGKELTLNDVLHVPDIHKNLVSG-SLLSKNGFKLVFVSDKFVL 400
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A0J7KAH3_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAH3_LASNI) HSP 1 Score: 66.2 bits (160), Expect = 1.490e-8 Identity = 69/270 (25.56%), Postives = 119/270 (44.07%), Query Frame = 1
Query: 1 EAWRNLEFHYRAKGTRQILRLSHEINEKTMEPGSDPFKFMMEVDRLAADLHRLANKSVTELRKCVIIVSGLSADFEMECRILENNPAGLNRAEIERVVVNQYNRLLRQQQDSKALSASKGNVTANREKGKNRRLHHKFDGKCFNCGKKGHRAVDCRSAKKKSEKSGATDDRKECGGS-----------GRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
+AW NL+ + KG + + L + + + +++ + A L L + E+ +++ SGL ++ LE++ + I+ ++ + +Q +++A SK T ++ K GKCF CGK GH A CR+ A DD KE S G+ +EW LDSGA+ HM+ + + KK + A+ L G E+ + G K++++++V YVPGL+ NLLS
Sbjct: 81 QAWENLKNAFEDKGLTRKVGLLRILTSTKFQDCNSVEEYVNMIMTTAHTLKELDFEVKDEMIGALLL-SGLPDEYRPMIMGLESSGTAITADAIKVKILQEVKHGGKQSTETEAALYSKARATR-------KKSQDKVKGKCFACGKTGHFAAKCRNK--------ARDDNKEKDSSTHKVFATFAQAGKNDEWYLDSGASTHMTGWSSCLKDMKKCDK--TITAANRGQLKAVAHGVAEIGVTVNGGE-KVIRVENVLYVPGLAANLLS 331 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8977.1.1 >prot_A-nodosum_M_contig8977.1.1 ID=prot_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp MEPGSDPFKFMMEVDRLAADLHRLANKSVTELRKCVIIVSGLSADFEMECback to top mRNA from alignment at A-nodosum_M_contig8977:7067..8098+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8977.1.1 ID=mRNA_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1032bp|location=Sequence derived from alignment at A-nodosum_M_contig8977:7067..8098+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8977:7067..8098+ >mRNA_A-nodosum_M_contig8977.1.1 ID=mRNA_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig8977:7067..8098+ (Ascophyllum nodosum dioecious)back to top |