mRNA_A-nodosum_M_contig8977.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8977.1.1
Unique NamemRNA_A-nodosum_M_contig8977.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645)

HSP 1 Score: 75.5 bits (184), Expect = 9.080e-12
Identity = 56/177 (31.64%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  346 SASKGNVTANREKGKNRRLHHK-FDGKCFNCGKKGHRAVDCRSAKKKSEKSGA-------TDDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
            +A K N    R  GK +  + K F G C+NCGK GH+A DCR+ KK  EK+          DD      EC   G  +EW LDSGAT H+   +   + Y  A P   + + +     V+G+G++ + +     + K++ +++V +VP + +NL+S    V+  G   +   +K VL
Sbjct:  236 AAPKKNNKRKRHSGKEKNPNKKKFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKMT----SGKVLTLNNVMHVPSIRKNLVSAALLVKN-GFKCVLVSDKFVL 407          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A0J7K4F4_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4F4_LASNI)

HSP 1 Score: 75.1 bits (183), Expect = 1.610e-11
Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  409 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGATDD---RKECGGS--GRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
            KFDGKCFNC K GHR+ DCRS KKKS+K+  +DD      C      + E W LDS AT HM + +       K         A+  +  +   G + ++L    R  K++K++++ YVP L  NLLS V  V + G  + + +N+A +
Sbjct:  230 KFDGKCFNCDKIGHRSRDCRS-KKKSDKAANSDDVLTAIACNAELIRKSESWCLDSSATRHMCNDKQKFEVINKDEQSRVYTAAEHYVKSIK-TGNVSLNLKANQRENKVIKLENILYVPELRNNLLS-VPTVTERGYNVTFNKNRAYI 375          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2W247_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W247_CAPBA)

HSP 1 Score: 74.7 bits (182), Expect = 2.570e-11
Identity = 63/183 (34.43%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  316 LRQQQDSKALSA-SKGNVTANR----EKGKN-----RRLHH-------KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
            LR ++D+KA    SKGN T N     E G+N     + + H       KF GKCFNCGK GH++ DCR+ KK  +K  A         DD      EC   G    W +DSGAT H+  ++   S Y  A     + +A+     V+G G++ + +     + K++ +++V YVP L RNL+S
Sbjct:  691 LRIEEDNKAAERRSKGNSTMNGAHIVEDGQNNSKKRKNVEHGSNHPKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 869          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2X5Y1_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X5Y1_CAPBA)

HSP 1 Score: 74.3 bits (181), Expect = 3.290e-11
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  409 KFDGKCFNCGKKGHRAVDCRSAKK--KSEKSGATDDRK----------ECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
            KF GKCFNCGK GH++ DCR+ KK  K +++   +  K          EC   G    W +DSGAT H+  ++   S Y  A     + +A+     V+G G++ + +     + K++ +++V YVP L RNL+S
Sbjct:   28 KFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDNLCAMFTECNMVGNPRAWWMDSGATLHVCASKELFSTYAPAQAEETIYMANSTTAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 158          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2VDA6_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VDA6_CAPBA)

HSP 1 Score: 73.9 bits (180), Expect = 4.440e-11
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  409 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
            KF GKCFNCGK GH++ DCR+ KK  +K  A         DD      EC   G    W +DSGAT H+  ++   S Y  A     + +A+     V+G G++ + +     + K++ +++V YVP L RNL+S
Sbjct:  263 KFKGKCFNCGKIGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATHHVCESKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 393          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A2G2V5Q5_CAPBA (Geraniol 8-hydroxylase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V5Q5_CAPBA)

HSP 1 Score: 72.8 bits (177), Expect = 1.030e-10
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  409 KFDGKCFNCGKKGHRAVDCRSAKKKSEKSGAT--------DDR----KECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
            KF GKCFNCGK GH++ DCR+ KK  +K  A         DD      EC   G    W +DSGAT H+  ++   S Y  A     + +A+     V+G G++ + +     + K++ +++V YVP L RNL+S
Sbjct:  704 KFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 834          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A0J8B0L4_BETVV (CCHC-type domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0L4_BETVV)

HSP 1 Score: 65.9 bits (159), Expect = 2.360e-9
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  418 GKCFNCGKKGHRAVDCRSAKKKSEKSGATDDRKECGGSGRK-----EEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
            G+CFNCGK+GH A DCRS KKK E+S +TD+     G   +     E   +DSGA+ HM+  +  +S + +      +  ADG  +   G G ++V     GR  K V + DV YVP L  NLLS
Sbjct:   64 GRCFNCGKRGHFAKDCRSPKKK-EESSSTDELAFVAGDQEELYAVAESCYVDSGASRHMTGNKGLLSNFVELLDAVKIVTADGRTICGIGTGDMKV-----GRG-KTVTLKDVLYVPDLKMNLLS 181          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A438HJC7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HJC7_VITVI)

HSP 1 Score: 67.8 bits (164), Expect = 3.440e-9
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  409 KFDGKCFNCGKKGHRAVDCRSAKK-KSEKSGATDDRK---------------ECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
            KF GKC+NCGK GH++ DCR  KK K  ++  T+  K               EC   G  +EW +D+GAT H+   +   S YK       + + + +   V+G G++ + +     + K + ++DV +VP + +NL+S    + + G  L++  +K VL
Sbjct:  246 KFKGKCYNCGKTGHKSNDCRKPKKEKKPQANVTEFDKLSNDVSEMNLSDVVSECNIVGNTKEWWVDTGATRHICSNKLMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMT----SGKELTLNDVLHVPDIRKNLVSG-SLLSKNGFKLVFVSDKFVL 400          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A438CSS8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CSS8_VITVI)

HSP 1 Score: 67.4 bits (163), Expect = 5.590e-9
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  409 KFDGKCFNCGKKGHRAVDCRSAKK-KSEKSGATDDRK---------------ECGGSGRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSNVKAVEQWGKPLIYYRNKAVL 840
            KF GKC+NCGK GH++ DCR  KK K  ++  T+  K               EC   G  +EW +D+GAT H+   +   S YK       + + + +   V+G G++ + +     + K + ++DV +VP + +NL+S    + + G  L++  +K VL
Sbjct:  246 KFKGKCYNCGKTGHKSNDCRKPKKEKKPQANVTEFDKLSNDVFEMNLSAVVSECNIVGNTKEWWVDTGATCHICSNKWMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMT----SGKELTLNDVLHVPDIHKNLVSG-SLLSKNGFKLVFVSDKFVL 400          
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Match: A0A0J7KAH3_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAH3_LASNI)

HSP 1 Score: 66.2 bits (160), Expect = 1.490e-8
Identity = 69/270 (25.56%), Postives = 119/270 (44.07%), Query Frame = 1
Query:    1 EAWRNLEFHYRAKGTRQILRLSHEINEKTMEPGSDPFKFMMEVDRLAADLHRLANKSVTELRKCVIIVSGLSADFEMECRILENNPAGLNRAEIERVVVNQYNRLLRQQQDSKALSASKGNVTANREKGKNRRLHHKFDGKCFNCGKKGHRAVDCRSAKKKSEKSGATDDRKECGGS-----------GRKEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*IADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLS 777
            +AW NL+  +  KG  + + L   +     +  +   +++  +   A  L  L  +   E+   +++ SGL  ++      LE++   +    I+  ++ +     +Q  +++A   SK   T        ++   K  GKCF CGK GH A  CR+         A DD KE   S           G+ +EW LDSGA+ HM+   + +   KK      +  A+   L     G  E+ +   G   K++++++V YVPGL+ NLLS
Sbjct:   81 QAWENLKNAFEDKGLTRKVGLLRILTSTKFQDCNSVEEYVNMIMTTAHTLKELDFEVKDEMIGALLL-SGLPDEYRPMIMGLESSGTAITADAIKVKILQEVKHGGKQSTETEAALYSKARATR-------KKSQDKVKGKCFACGKTGHFAAKCRNK--------ARDDNKEKDSSTHKVFATFAQAGKNDEWYLDSGASTHMTGWSSCLKDMKKCDK--TITAANRGQLKAVAHGVAEIGVTVNGGE-KVIRVENVLYVPGLAANLLS 331          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8977.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F43F6459.080e-1231.64hypothetical protein n=1 Tax=Corynebacterium parak... [more]
A0A0J7K4F4_LASNI1.610e-1136.24Rna-dependent dna polymerase n=1 Tax=Lasius niger ... [more]
A0A2G2W247_CAPBA2.570e-1134.43Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2X5Y1_CAPBA3.290e-1134.07Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2VDA6_CAPBA4.440e-1135.56Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2V5Q5_CAPBA1.030e-1035.56Geraniol 8-hydroxylase n=1 Tax=Capsicum baccatum T... [more]
A0A0J8B0L4_BETVV2.360e-940.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A438HJC7_VITVI3.440e-930.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CSS8_VITVI5.590e-930.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KAH3_LASNI1.490e-825.56Retrovirus-related pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8977contigA-nodosum_M_contig8977:7067..8098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size840
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.76e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size552
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870329.9916399-UTR-A-nodosum_M_contig8977:7066..71531680870329.9916399-UTR-A-nodosum_M_contig8977:7066..7153Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8977 7067..7153 +
1680870330.101925-UTR-A-nodosum_M_contig8977:7897..80981680870330.101925-UTR-A-nodosum_M_contig8977:7897..8098Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8977 7898..8098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870330.0048485-CDS-A-nodosum_M_contig8977:7153..76021680870330.0048485-CDS-A-nodosum_M_contig8977:7153..7602Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8977 7154..7602 +
1680870330.0894892-CDS-A-nodosum_M_contig8977:7794..78971680870330.0894892-CDS-A-nodosum_M_contig8977:7794..7897Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8977 7795..7897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8977.1.1prot_A-nodosum_M_contig8977.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8977 7154..7897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8977.1.1

>prot_A-nodosum_M_contig8977.1.1 ID=prot_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp
MEPGSDPFKFMMEVDRLAADLHRLANKSVTELRKCVIIVSGLSADFEMEC
RILENNPAGLNRAEIERVVVNQYNRLLRQQQDSKALSASKGNVTANREKG
KNRRLHHKFDGKCFNCGKKGHRAVDCRSAKKKSEKSGATDDRKECGGSGR
KEEWELDSGATFHMSHTRAGMSAYKKASPGTNV*
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mRNA from alignment at A-nodosum_M_contig8977:7067..8098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8977.1.1 ID=mRNA_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1032bp|location=Sequence derived from alignment at A-nodosum_M_contig8977:7067..8098+ (Ascophyllum nodosum dioecious)
GAAGCGTGGAGAAATCTTGAATTTCACTACAGAGCAAAAGGAACCAGACA AATACTTCGTCTGTCCCATGAAATCAACGAAAAAACAATGGAACCCGGTA GTGACCCGTTTAAGTTTATGATGGAAGTTGACAGGCTGGCAGCAGACCTT CACCGTTTGGCGAACAAATCCGTAACTGAACTCAGAAAGTGCGTGATCAT TGTATCTGGACTGTCTGCTGACTTCGAGATGGAGTGTCGAATTTTAGAGA ACAACCCTGCTGGTCTTAACAGGGCTGAGATTGAGCGTGTTGTAGTAAAT CAATACAACAGACTTCTCAGGCAGCAACAGGACTCGAAGGCATTGTCAGC ATCGAAGGGCAACGTCACGGCAAATCGCGAAAAGGGGAAGAACAGAAGAC TCCACCACAAATTCGATGGTAAATGCTTCAATTGTGGGAAGAAAGGTCAC CGCGCTGTCGACTGCAGGAGCGCGAAGAAAAAGAGTGAAAAATCCGGAGC TACCGACGATAGGAAGGAGTGCGGTGGCAGCGGTAGGTGCTACATCTGCG GAAGTGAGGAGCACCTTGCGCACAGGCACTGTGGTCTGTGCAAGAGCCTT GAGCACCGGACGCGAGACTGTGAGGAGCGCGGAGCTGAAAAGGGCGCAAT ACTGGCAAAACTGACTGTGCCGGTGGTTCCTGAGGTGAGAGAAGTGACGG CGATGGTGGGAGCGGCTCGTAGCGTTAGGAAGGAAGAATGGGAATTAGAT TCCGGCGCCACATTCCACATGTCGCACACCCGCGCCGGAATGTCTGCGTA TAAGAAGGCGTCGCCGGGGACGAACGTTTAGATCGCCGACGGTAATATTC TACCGGTGGACGGGTTCGGGAGAATCGAGGTGGATCTAGACCAACCGGGG CGTACAACCAAGATGGTGAAGATGGACGATGTCGCGTATGTGCCGGGACT CTCCCGGAATCTGCTGTCTAATGTCAAAGCAGTGGAGCAATGGGGGAAAC CGTTAATCTACTACAGAAATAAAGCCGTTTTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8977:7067..8098+

>mRNA_A-nodosum_M_contig8977.1.1 ID=mRNA_A-nodosum_M_contig8977.1.1|Name=mRNA_A-nodosum_M_contig8977.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig8977:7067..8098+ (Ascophyllum nodosum dioecious)
ATGGAACCCGGTAGTGACCCGTTTAAGTTTATGATGGAAGTTGACAGGCT
GGCAGCAGACCTTCACCGTTTGGCGAACAAATCCGTAACTGAACTCAGAA
AGTGCGTGATCATTGTATCTGGACTGTCTGCTGACTTCGAGATGGAGTGT
CGAATTTTAGAGAACAACCCTGCTGGTCTTAACAGGGCTGAGATTGAGCG
TGTTGTAGTAAATCAATACAACAGACTTCTCAGGCAGCAACAGGACTCGA
AGGCATTGTCAGCATCGAAGGGCAACGTCACGGCAAATCGCGAAAAGGGG
AAGAACAGAAGACTCCACCACAAATTCGATGGTAAATGCTTCAATTGTGG
GAAGAAAGGTCACCGCGCTGTCGACTGCAGGAGCGCGAAGAAAAAGAGTG
AAAAATCCGGAGCTACCGACGATAGGAAGGAGTGCGGTGGCAGCGGTAGG
AAGGAAGAATGGGAATTAGATTCCGGCGCCACATTCCACATGTCGCACAC
CCGCGCCGGAATGTCTGCGTATAAGAAGGCGTCGCCGGGGACGAACGTTT
AG
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