prot_A-nodosum_M_contig897.20.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig897.20.1
Unique Nameprot_A-nodosum_M_contig897.20.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length117
Homology
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BLAST of mRNA_A-nodosum_M_contig897.20.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.630e-11
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0 
Query:   14 YNKLVERMKG----LIGKYIEAQGTIRSLQSQVKELRAHRVATSP-EGDGXXXXDSGPGREEGAANPDFGATIAALQDQLREVTRAKDDAEKRAE 103
            Y+ L E+ +     LI KY EAQG I+ LQ QV+EL+ H+   +  +GDG           +G A+P FGATIAALQ QLREVT  K++A +RAE
Sbjct:  136 YSALQEKFRQEGVVLIAKYKEAQGVIKGLQEQVQELQDHKPPDADADGDGA----------KGGADPAFGATIAALQTQLREVTEEKNEAVQRAE 220
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BLAST of mRNA_A-nodosum_M_contig897.20.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.970e-5
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:   34 TIRSLQSQVKELRAHRVATSPEGDGXXXXDSGPGREE-------GAANPDFGATIAALQDQLREVTRAKDDAEKRAEMAAA 107
            TI +LQ+Q++E+   +       +      +   ++E       GA +PDFGATIAALQ QLREVT+ KD+A +RAE A A
Sbjct:  209 TIAALQAQLREVTEEKNEAVQRAEAEAAAAATAAQQETGEDAAGGADDPDFGATIAALQTQLREVTQEKDEAVQRAEAAVA 289
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE4.630e-1147.37GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI3.970e-541.98GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..108
NoneNo IPR availableCOILSCoilCoilcoord: 28..48
NoneNo IPR availableCOILSCoilCoilcoord: 116..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:160544..161644 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.20.1mRNA_A-nodosum_M_contig897.20.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig897 160140..179197 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig897.20.1 ID=prot_A-nodosum_M_contig897.20.1|Name=mRNA_A-nodosum_M_contig897.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MEGSAGGGHRGADYNKLVERMKGLIGKYIEAQGTIRSLQSQVKELRAHRV
ATSPEGDGDGEGDSGPGREEGAANPDFGATIAALQDQLREVTRAKDDAEK
RAEMAAAASTVAGERV*
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