prot_A-nodosum_M_contig897.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig897.12.1
Unique Nameprot_A-nodosum_M_contig897.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length93
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig897.12.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.060e-19
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 0 
Query:    1 RAAAEARWADESATLKQHIDEVEARVESAAVRTAELEAGMARSVEEGVKTARDETVEVRRRFKEQEVATAEAREALATANAELEKARRELKQR 93
            R AAEARWA+ESA LKQ I E+EARV++AA RTAE+EA +A SVEEGV+ A++ET E RR  +E   A  E REALA A ++L+K +RELKQR
Sbjct: 2815 RTAAEARWAEESAVLKQQIAELEARVKTAAARTAEVEANIAGSVEEGVRAAKEETAEARRLEEEGAKAXGELREALAAARSDLDKTKRELKQR 2907
[Close]
BLAST of mRNA_A-nodosum_M_contig897.12.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.290e-13
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:    1 RAAAEARWADESATLKQHIDEVEARVESAAVRTAELEAGMARSVEEGVKTARDETVEVRR 60
            R AAEARWA+ESA LKQ I E+EARVE+AA RTAE+EA +A SVEEGV+ A++ET E RR
Sbjct: 2622 RTAAEARWAEESAALKQQISELEARVETAAARTAEVEANIAGSVEEGVRAAKEETAEARR 2681
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE1.060e-1962.37GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI1.290e-1370.00GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:119886..120900 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.12.1mRNA_A-nodosum_M_contig897.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig897 119885..120900 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig897.12.1 ID=prot_A-nodosum_M_contig897.12.1|Name=mRNA_A-nodosum_M_contig897.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
RAAAEARWADESATLKQHIDEVEARVESAAVRTAELEAGMARSVEEGVKT
ARDETVEVRRRFKEQEVATAEAREALATANAELEKARRELKQR
back to top