mRNA_A-nodosum_M_contig897.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig897.12.1
Unique NamemRNA_A-nodosum_M_contig897.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig897.12.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.060e-19
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    1 RAAAEARWADESATLKQHIDEVEARVESAAVRTAELEAGMARSVEEGVKTARDETVEVRRRFKEQEVATAEAREALATANAELEKARRELKQR 279
            R AAEARWA+ESA LKQ I E+EARV++AA RTAE+EA +A SVEEGV+ A++ET E RR  +E   A  E REALA A ++L+K +RELKQR
Sbjct: 2815 RTAAEARWAEESAVLKQQIAELEARVKTAAARTAEVEANIAGSVEEGVRAAKEETAEARRLEEEGAKAXGELREALAAARSDLDKTKRELKQR 2907
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BLAST of mRNA_A-nodosum_M_contig897.12.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.290e-13
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 RAAAEARWADESATLKQHIDEVEARVESAAVRTAELEAGMARSVEEGVKTARDETVEVRR 180
            R AAEARWA+ESA LKQ I E+EARVE+AA RTAE+EA +A SVEEGV+ A++ET E RR
Sbjct: 2622 RTAAEARWAEESAALKQQISELEARVETAAARTAEVEANIAGSVEEGVRAAKEETAEARR 2681
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE1.060e-1962.37GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI1.290e-1370.00GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:119885..120900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870328.2978563-CDS-A-nodosum_M_contig897:119885..1201311680870328.2978563-CDS-A-nodosum_M_contig897:119885..120131Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 119886..120131 -
1680870328.3079722-CDS-A-nodosum_M_contig897:120867..1209001680870328.3079722-CDS-A-nodosum_M_contig897:120867..120900Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 120868..120900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.12.1prot_A-nodosum_M_contig897.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig897 119886..120900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig897.12.1

>prot_A-nodosum_M_contig897.12.1 ID=prot_A-nodosum_M_contig897.12.1|Name=mRNA_A-nodosum_M_contig897.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
RAAAEARWADESATLKQHIDEVEARVESAAVRTAELEAGMARSVEEGVKT
ARDETVEVRRRFKEQEVATAEAREALATANAELEKARRELKQR
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mRNA from alignment at A-nodosum_M_contig897:119885..120900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig897.12.1 ID=mRNA_A-nodosum_M_contig897.12.1|Name=mRNA_A-nodosum_M_contig897.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1016bp|location=Sequence derived from alignment at A-nodosum_M_contig897:119885..120900- (Ascophyllum nodosum dioecious)
CGCGCTGCGGCTGAAGCTCGCTGGGCCGACGAGGTAAGGGGGAATTACCT
AGGGGGAATTTGTGGACGTTTTGTCACCTTGTTGGGGTTGGTGGGGATAG
AGAAGGTCCGAAGTCCAAATAGGTAGGGTGGCTCGTGTACTGAGTCGAGC
TAGAAGGCAATGCACGGGGCGTTTTTACCGGACGACGGATTGCGACCCTC
TTGATGAGGACAGAGGGATCGCGTGTTGCTCATTTTCGAGAAAACACTTG
AACGGGGTCCCAGGGTAGACTTCGAGAGTGGAAGATGACTTGGCATTGTT
AACCCCTGGTCTTCTGGGGATCGAGAAAAAAAAAGGTTGAATCACGTAAT
TTTGTTTTTATTATTGTCCTTCAGTTTTCTCGGCCGTAGAGTACACCTCC
CGCGTCCATTGACACGCGTGGGCCCCACGCCTTTGTCTCGTCTTGTAAAG
CTCGACGACGCTATTGTAGAGAGCTCTTTTAACAAAGAAGGAAAATTCTG
TACGTACCAGTGTCTACTGTACCGGGTTATGCTTTTGAGGGAGCTTCGCT
CAGGTTCGCGTGTTGACGTTGGACGCCCATTTTCCTTCACGCTGCTGATG
GTTATGAAGAAACACAAAAATATTATCACGAAAAGGCAAAATCTGTGCCG
CCCCACCCCAACGCAGACTGGCGCAGCAGTTTGTACCCACGACTACCTCC
TGAACACCCTTCACACAATTTCCCTCCCCTGAAACGGTGCTTTCTCGGTA
ATACCACGGCTTTCCGCAGTCCGCGACCCTGAAGCAGCATATTGACGAAG
TGGAGGCGCGCGTGGAATCCGCTGCGGTGAGGACCGCTGAGCTGGAAGCC
GGCATGGCTCGGTCCGTCGAGGAGGGGGTTAAGACCGCCAGGGACGAGAC
GGTGGAGGTGCGGAGGCGCTTCAAGGAGCAGGAAGTGGCGACCGCCGAGG
CCAGGGAAGCTCTCGCGACGGCCAACGCGGAGCTCGAGAAGGCTCGCCGT
GAGCTCAAGCAGAGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig897:119885..120900-

>mRNA_A-nodosum_M_contig897.12.1 ID=mRNA_A-nodosum_M_contig897.12.1|Name=mRNA_A-nodosum_M_contig897.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig897:119885..120900- (Ascophyllum nodosum dioecious)
CGCGCTGCGGCTGAAGCTCGCTGGGCCGACGAGTCCGCGACCCTGAAGCA
GCATATTGACGAAGTGGAGGCGCGCGTGGAATCCGCTGCGGTGAGGACCG
CTGAGCTGGAAGCCGGCATGGCTCGGTCCGTCGAGGAGGGGGTTAAGACC
GCCAGGGACGAGACGGTGGAGGTGCGGAGGCGCTTCAAGGAGCAGGAAGT
GGCGACCGCCGAGGCCAGGGAAGCTCTCGCGACGGCCAACGCGGAGCTCG
AGAAGGCTCGCCGTGAGCTCAAGCAGAGG
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