prot_A-nodosum_M_contig89.41.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig89.41.1
Unique Nameprot_A-nodosum_M_contig89.41.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1136
Homology
BLAST of mRNA_A-nodosum_M_contig89.41.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 5.420e-72
Identity = 179/384 (46.61%), Postives = 231/384 (60.16%), Query Frame = 0
Query:  739 ENASIDSFSNSEQSPSGFDSDFGRGHRAQGKKADASLVEGTPRRCGRGSKT-DLAGFYAPLTVSNIGGTAKYIS-LSIVQRSTLDWMVWRE-----GVGDMSETRKMHSGQPEIEKTIRGGILGHLAAEEASSCVATLIR----------NAPRAGAE-ENVVVKTSLPHGATLVIAPTKDAVEEWSKELGADTR-LSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKD----------VANVGRWHTRRTQEERER----VSKTETMTSLLHRVWWHRVVASGAQVLANQRSARANAVAGLVGGARWCVVDREDMSTVESASERLRGLTTFIGVPSEVPLVDVADCLFYHSRPRHIAPLPCQGP-AAEASL 1088
            E ASIDSFS SE   S   +        +    D+SL EGTPRR G G++   L GFY PL V+N+   A+  S LS +Q+STL WM+WRE     G         +     +    I+GG+LGHL ++EAS+CV  ++R          +  + G+    +   T LP G TL++APTK+A   WS  L + +  LSVL+YVMPL+ERRRL A+Q A FDVVVTTYD+L+AKEV R V+           +    +W TR  +E  ++     SKT+ M SLLH VWW RVVA GAQ+LA QRSARA A   L+G ARWC+VD E MS VE ASER+R L  F+ VP+ VPLV+VA+ L + SRPRHIAPL  + P AA+ SL
Sbjct:  996 EQASIDSFSESEPERSKPGAGAKEAGADEDMTGDSSLAEGTPRRRGAGARDRSLGGFYPPLQVANLANKAREGSTLSTLQKSTLQWMLWRERGEKGGRSAXXXXXXVSDDDDDGAIDIKGGLLGHLPSDEASTCVHAVVRAGVTFNDGDGSGRKVGSRARRIHTGTGLPCGPTLILAPTKEAAWRWSDRLESGSGGLSVLNYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTRNAKEGGQKRTSASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAPLYPRAPGAADNSL 1379          
BLAST of mRNA_A-nodosum_M_contig89.41.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 3.010e-68
Identity = 184/410 (44.88%), Postives = 232/410 (56.59%), Query Frame = 0
Query:  739 ENASIDSFSNSEQSPS---------GFDSDFGRGHRAQGKKADASLVEGTPRRCGRGSKTD-LAGFYAPLTVSNIGGTAKY-ISLSIVQRSTLDWMVWREGVGDMSETRKMHSGQPEIEKT--------IRGGILGHLAAEEASSCVATLIR----------NAPRAGAEENVVVKTSLPHGATLVIAPTKDAVEEWSKELGADTR-LSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKD----------VANVGRWHTRRTQEERER-----VSKTETMTSLLHRVWWHRVVASGAQVLANQRSARANAVAGLVGGARWCVVDREDMSTVESASERLRG--------------LTTFIGVPSEVPLVDVADCLFYHSRPRHIAPLPCQGP-AAEASL 1088
            E ASIDSFS SE   S         G D D   G         +SL EGTPRR G G++   L GFY PL V+N+   A+  ++LS +Q STL WM+WRE  G+      + +G               I+GG+LGHL++EEAS+C+  L+R          +    G        T LP G+TL++APTK+A   WS  L + +  LSVLSYVMPL+ERRRL A+Q A FDVVVTTYD+L+AKEV R V+           +    +W TR  +E  ++      S T+ M SLLH VWW RVVA GAQ+LA QRSARA A   L G ARWC+VD E MS VE AS+R+R               L  F+ VP+ VPLVDVA+ LF+ SRPRHIAPL  + P AA+ SL
Sbjct:  993 EQASIDSFSESEPGRSKPGVSATEAGADEDMTDG---------SSLAEGTPRRRGAGARDCYLGGFYPPLQVANLASKAREGLTLSTLQESTLQWMLWRER-GEKGGRSAVAAGASVXXXXXXXXXAIDIKGGLLGHLSSEEASACLHALVRAGVTFNDGDGSRGMVGRARRTHNGTGLPCGSTLILAPTKEAAWRWSDRLESGSGGLSVLSYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTRNGKEAGQKRSSSSASMTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAPLYPRAPGAADNSL 1392          
BLAST of mRNA_A-nodosum_M_contig89.41.1 vs. uniprot
Match: A0A067CBP1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBP1_SAPPC)

HSP 1 Score: 83.2 bits (204), Expect = 2.120e-12
Identity = 84/245 (34.29%), Postives = 115/245 (46.94%), Query Frame = 0
Query:  816 QRSTLDWMVWREGVGDMSETRKMHSGQPEIEKTIRGGILG-HLAAEEASSCVATLIRNAPRAGAEENVVVKTSLPHGATLVIAPTKDAVEEWSKELGADTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKDVANVG-----RW-HTRRTQEERERVSKTETMTSLLHRVWWHRVVASGAQVLANQRSARANAVAGLVGGARWCVVDREDMSTVESASERLRGLTTFIGVP 1053
            Q   +DWM  RE  G + E              I+GGIL   +   +  SC+A LI  +  A A E      S P   TL+IAP    + +W +E+   T LSV  Y    ++R R R      FD+V++TYD+LR  EVA  V  V          W  T+R +EE+  +SK       LHRV W RV+   A ++AN  +AR  A   L   ARWCV      + +++  E L  L  FIG+P
Sbjct:  361 QERAVDWMWQRERPGVLDE--------------IKGGILADEMGLGKTVSCLA-LIERSRDANATEK-----SRP---TLIIAPLS-LLHQWEREIKHKTSLSVGVYHGTDRKRFR-RDPDFHAFDIVLSTYDVLRLPEVAIPVSMVYRTAPRKDTSWIATKRLREEKVLLSK-------LHRVHWDRVILDEAHLIANMTAARTQASFQLHARARWCVTG----TPIQNRCEDLHPLFKFIGIP 569          
BLAST of mRNA_A-nodosum_M_contig89.41.1 vs. uniprot
Match: A0A1V9ZDT9_9STRA (SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDT9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.400e-12
Identity = 72/217 (33.18%), Postives = 106/217 (48.85%), Query Frame = 0
Query:  843 PEIEKTIRGGILG-HLAAEEASSCVATLIRNAPRAGAEENVVVKTSLPHGATLVIAPTKDAVEEWSKELGADTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKDVANVGR-----WHTRRTQEERERVSKTETMTSLLHRVWWHRVVASGAQVLANQRSARANAVAGLVGGARWCVVDREDMSTVESASERLRGLTTFIGVP 1053
            P   +  RGGIL   +   +  SC+A LI  +PR                 TL+IAP    + +W  E+ A T LSV  Y    ++R R + +  A FDV+++TYD+LR KE A     VA+ GR     W   + Q E ++      + S LH++ W RV+   A ++AN  SAR  A   L+  ARWCV      + +++  E L  L  F+G+P
Sbjct:  398 PTTPEQRRGGILADEMGLGKTISCLA-LIEQSPRGR--------------PTLIIAPLS-VLAQWEFEVKAKTSLSVGVYHGTGRKRFRHQPDFCA-FDVILSTYDVLRMKETA---VPVASAGRSRDTSWIAAKRQREEKQ------LLSRLHKIHWERVILDEAHLIANMASARTQASFQLLANARWCVTG----TPIQNRLEDLHPLFKFLGIP 584          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.41.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB47_ECTSI5.420e-7246.61SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE3.010e-6844.88SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A067CBP1_SAPPC2.120e-1234.29Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZDT9_9STRA8.400e-1233.18SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 426..446
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 745..771
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1114..1135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 598..612
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 596..678
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1095..1135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..133
NoneNo IPR availablePANTHERPTHR45626TRANSCRIPTION TERMINATION FACTOR 2-RELATEDcoord: 756..1027
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 866..1028
e-value: 1.1E-5
score: 26.7
IPR000330SNF2, N-terminalPFAMPF00176SNF2-rel_domcoord: 816..1027
e-value: 1.9E-14
score: 53.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:307404..326398 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.41.1mRNA_A-nodosum_M_contig89.41.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig89 307231..326618 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig89.41.1 ID=prot_A-nodosum_M_contig89.41.1|Name=mRNA_A-nodosum_M_contig89.41.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1136bp
MSNEATYREAWATFVDDAIKRQSVNGDGERFGDRVGLRDLIQLEEVLSKL
AGKENLVSFPKGSGGGTQDLPRVREPLETVSGLPTLFENPLPSFFESMYA
AAAPVGDETGRQSDSGGSCARSTGQEGVDPKGTKYVAEHLAAPVKRGFDI
VRSQVGGNEGGSDARRVVSPASQTGEPARVSAGVRKDGEEDRHHDLASDL
ALARARNLGDTDMAVYLEGREDAKASIAIRATSSCSHVSSRELEPSGTEL
TIPTVVRMPLVGEPLSKHSNFECLGRSTQPDAHSLDGHSALEASYIADKT
LVLEERASPDCQLTGFLAREDAEIVPSTIDVQVLSLSERLEATRIETESV
SGANGTSPRSSTSLPEEQEVLLEITVLEASRCNSNDACGTEAFEGDAFSS
QEIKHASSILSDSPQTDDRRLWLVAARDESRESVQLRRDLERSREEACGD
VSYVSEGQVRLASRESWEPGSDSLAASTPDDGQRTRFDGASLVNDENSAE
LPKRDFGADQIHTLGRTLSEGARMDDHGKPCKIMEDNDPNLVPPQLEVVV
STESKTLGSGFSQGIGGFEFEGDAPSPLAMVESLFVDDVVEGRAENGFSP
ARSTSSEGSESTLEAEEAAPMISAIETMAEGDETRVPGASGRESSSPHAD
KLREGTSNGAMPPPSPPQQGSPVSHLALDMQLLEITREPNKLVKRGSILP
EECAATSPDAGGVQRRNNLRRESLLRSPCESNFDEACRENASIDSFSNSE
QSPSGFDSDFGRGHRAQGKKADASLVEGTPRRCGRGSKTDLAGFYAPLTV
SNIGGTAKYISLSIVQRSTLDWMVWREGVGDMSETRKMHSGQPEIEKTIR
GGILGHLAAEEASSCVATLIRNAPRAGAEENVVVKTSLPHGATLVIAPTK
DAVEEWSKELGADTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILR
AKEVARAVKDVANVGRWHTRRTQEERERVSKTETMTSLLHRVWWHRVVAS
GAQVLANQRSARANAVAGLVGGARWCVVDREDMSTVESASERLRGLTTFI
GVPSEVPLVDVADCLFYHSRPRHIAPLPCQGPAAEASLAEDCSPSLGRAF
SRSPPGGSSAGPHRRDLLLDRQGEKAPSGRVASRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038718SNF2-like_sf
IPR000330SNF2_N