prot_A-nodosum_M_contig8887.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8887.1.1
Unique Nameprot_A-nodosum_M_contig8887.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length112
Homology
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A5S9X2Z9_ARATH (Uncharacterized protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9X2Z9_ARATH)

HSP 1 Score: 89.0 bits (219), Expect = 2.660e-18
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRD------SPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPSR 110
            AFL  D+ E +Y++LPDGY D       PN V RL+K++YGL  A   W  KF   L+A GFE+   D  +F R  +G   ++++VYVDD+++ S T+Q      E L++SF  R
Sbjct: 1220 AFLNGDLEETIYMKLPDGYADIKGTSLPPNAVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRC-IGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLR 1333          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: Q9SIM3_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SIM3_ARATH)

HSP 1 Score: 88.6 bits (218), Expect = 3.600e-18
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRD------SPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPSR 110
            AFL  D+ E +Y++LPDGY D       PN V RL+K++YGL  A   W  KF   L+A GFE+   D  +F R  +G   ++++VYVDD+++ S T+Q      E L++SF  R
Sbjct: 1059 AFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRC-IGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLR 1172          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A401GKR6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GKR6_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-17
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSF 107
            AFL  D+ EE+Y+++P G+R S + V +L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F
Sbjct:  840 AFLNGDLDEEIYMKVPSGFRRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRF 944          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A401GVG5_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GVG5_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-17
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSF 107
            AFL  D+ EE+Y+++P G+R S + V +L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F
Sbjct:  913 AFLNGDLDEEIYMKVPSGFRRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRF 1017          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A401H0Z5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H0Z5_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-17
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSF 107
            AFL  D+ EE+Y+++P G+R S + V +L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F
Sbjct: 1263 AFLNGDLDEEIYMKVPSGFRRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRF 1367          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 86.7 bits (213), Expect = 1.680e-17
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSF 107
            AFL  D+ EE+Y+++P G+R S + + +L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F
Sbjct:  718 AFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRF 822          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.980e-17
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPSR 110
            A+  A + EE+++ LP G  D  +++G+ ++A+YGL  +G  W       L+  GFE+ +ADP VFR+     VV+IIV+YVDD+LV +E+ +D  + L  L+  FP++
Sbjct:  278 AYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLV-AESDEDCEELLASLKKKFPTK 385          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 84.7 bits (208), Expect = 8.090e-17
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSF 107
            AFL  D+ EE+Y+++P G+  S + V +L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F
Sbjct: 1041 AFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRF 1145          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A6H5K2J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 8.820e-17
Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPSRI 111
            A+  A + EE++++LP G  D  +++ + ++++YGL  +G  W       L+  GFE+ +ADP VFR+     VV+IIV+YVDD+LV   + +D  + L  L   FP++I
Sbjct:   20 AYTHATLDEEVFLKLPAGCGDKSHKIAKAERSIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKI 128          
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.060e-16
Identity = 41/107 (38.32%), Postives = 68/107 (63.55%), Query Frame = 0
Query:    2 AFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFP 108
            A++ A + EE ++ LP G  D   +V  +++A+YGL  +G  W  +    LIA G+E+ +ADP VFRR    +VV +IV+YVDD+L+++ ++Q+  + L  L+  FP
Sbjct:  514 AYIHATLKEEFFIRLPQGCGDMSGKVCNVERALYGLKQSGREWGFEAADALIANGYEQCRADPCVFRRMVGAEVVGLIVIYVDDILLVA-SEQERQEVLASLQKKFP 619          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8887.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S9X2Z9_ARATH2.660e-1840.87Uncharacterized protein n=1 Tax=Arabidopsis thalia... [more]
Q9SIM3_ARATH3.600e-1840.87Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A401GKR6_9APHY1.240e-1743.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GVG5_9APHY1.240e-1743.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H0Z5_9APHY1.250e-1743.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H123_9APHY1.680e-1742.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JLS1_9PHAE2.980e-1738.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401G4V0_9APHY8.090e-1742.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K2J9_9PHAE8.820e-1736.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LQZ7_9PHAE1.060e-1638.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..99
e-value: 4.7E-18
score: 65.7
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 15..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8887contigA-nodosum_M_contig8887:1343..1678 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8887.1.1mRNA_A-nodosum_M_contig8887.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8887 1343..1690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8887.1.1 ID=prot_A-nodosum_M_contig8887.1.1|Name=mRNA_A-nodosum_M_contig8887.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
MAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGG
ELIAKGFERSQADPRVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQAL
EDLRSSFPSRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR043502DNA/RNA_pol_sf