prot_A-nodosum_M_contig886.7.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig886.7.1
Unique Nameprot_A-nodosum_M_contig886.7.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length183
Homology
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY)

HSP 1 Score: 102 bits (255), Expect = 4.590e-22
Identity = 65/200 (32.50%), Postives = 106/200 (53.00%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELP--EDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKA-----RFNVTKTSMIPMVTGA----KPLSKEDGPKTSNER--------EEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R +LA AA  +W +  ++V+ A+L A+++E+I+++ P  +  R   + +  LR  IYGL +SG  WF+K +  + E G  +S  D CVF    D  +       +V  T++  M +        +SK        E         E+MR +PY EA+G+LM+AA     D++FA   L++F  +PG  HW+AA + LRY
Sbjct: 1022 IRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQPPGQAKRGREHWVCHLRHMIYGLKQSGCQWFKKISTALNEMGLSRSLVDHCVFYLDEDNDSITLIIALSVDDTTIAGMNSAVLWFKTEISKHFEMTDLGEMHWILGIEFEDMRNVPYHEAIGSLMYAALGMRPDIAFAVMALSQFMQNPGRAHWEAAKRVLRY 1221          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A5A7SIN2_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SIN2_CUCME)

HSP 1 Score: 101 bits (252), Expect = 1.120e-21
Identity = 63/195 (32.31%), Postives = 103/195 (52.82%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPED--NRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMV-------TGAKP-----LSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R +L+ A   ++++  ++V+ A L  +++E I++  PE    R     +  L ++IYGL ++   W  +F   IK  GF+Q+  +PC++++I  GK  F V     I  +       T  K      LSKE  PKT  E E+MRRIPY  AVG+LM+A      D+ +A   ++++  +PG  HW A    L+Y
Sbjct:  632 IRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSKPEGFITRGQEQKVCKLNRSIYGLKQASKSWNIRFDIAIKSYGFDQNVDEPCLYKKINKGKVAFLVLYVDDILFIGNDMGYLTDVKAWHGVHLSKEQCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKY 826          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A5A7TXU6_CUCME (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TXU6_CUCME)

HSP 1 Score: 99.8 bits (247), Expect = 2.310e-21
Identity = 60/183 (32.79%), Postives = 96/183 (52.46%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNT--IGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R +L+ AA  ++++  ++V+ A L  +++E IY++  E          I  L  +IYGL ++   W  +F   IK  GF+Q   +PCV++RI++    F         +V     LSKE  PKT  E EEMR IPY   VG+LM+      LD+ + A  ++++  +PG  HW A    L+Y
Sbjct:  157 IRILLSIAAYFDYEIWEMDVKTAFLNDNLEETIYMQQQEGFITLDQEQKICKLNHSIYGLKQASQSWNIRFDTAIKSYGFDQIVDEPCVYKRIINNSVAF---------LVLHGVTLSKEQCPKTPQEVEEMRHIPYALVVGSLMYVMLCTRLDICYVAGVVSRYQSNPGLAHWTAVKTILKY 330          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.140e-21
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R + A A  +N  L + +++QA +Q+++++++++ LP+        I  L K++YGL ++   W    T  +   GF Q  AD CVFR + DG     +       M     P+S +      +E E    +P+RE VG+LMW AT    D++ A   +A++C  P  VHWKAA+  L Y
Sbjct:   21 VRLLAALACEQNLDLCHFDIQQAFVQSELEDDVFMRLPQGCGRLSGLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVGFLMWLATXPVSVKLT--DFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGY 199          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A5A7T9X1_CUCME (Gag/pol protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7T9X1_CUCME)

HSP 1 Score: 98.2 bits (243), Expect = 6.600e-21
Identity = 59/183 (32.24%), Postives = 97/183 (53.01%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPED--NRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R +L+ A   ++++  ++V  A L  +++E IY+  PE+   +     +  L+K+IYGL ++   W  KF   IK  GFEQ+  +P V++     K     +K  ++    G   LSKE  PKT  E E+MR+IPY  AVG+LM+A      D+ F    ++++  +PG  HW      L+Y
Sbjct:  198 IRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKPEEFIKKGQEQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYK-----KYEMQNSKKGLLSYKYGIH-LSKEQCPKTPQEVEDMRKIPYASAVGSLMYAMLCTRPDICFLVRMVSRYQSNPGRDHWTVVKNILKY 374          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6A2Y195_HIBSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y195_HIBSY)

HSP 1 Score: 99.0 bits (245), Expect = 8.010e-21
Identity = 62/204 (30.39%), Postives = 102/204 (50.00%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPED--NRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVF-------------RRIVD-------GKARFNVTKTSMIPMVTGAK-PLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R VL     +N  L  ++V+ A L  D+DEEIY++ PE        N +  L+K +YGL ++   W++KF   +   GF +  AD C +              +IV+       G A+FN+    ++    G    LSKE  PKT  ER  M ++ Y  A+G+LM+A      +++ A   ++++ ++PG V+W+A    LRY
Sbjct:  105 IRMVLKIVPAENLHLEQLDVKTAFLNGDLDEEIYMKQPEGLIEAGKKNLVCRLKKNLYGLKQAPRQWYKKFDSFMGNNGFTRCQADHCCYIKKFRHARNYKLEEKIVEAVCNEDMGAAKFNMQDAKLVSTPLGVHFRLSKEQSPKTEEERAHMVKVLYASAIGSLMYAMVCTRPNIARAVGVVSRYMNNPGKVYWEAVKWILRY 308          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A5AL16_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5AL16_VITVI)

HSP 1 Score: 94.0 bits (232), Expect = 4.570e-20
Identity = 59/210 (28.10%), Postives = 96/210 (45.71%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDN--RAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDG--------------------------KARFNVTKTSMIPMVTGAK-PLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R VL   A KN  L  ++V+ A L  D++E++Y+  PE    +   N +  LRK++Y L +    W++KF   +   G+++   D C + +  D                           K  FN+ +   +    G+   LSKE  PKT  ER+ M ++PY  A+G+LM+       D++     +++F   PG  HWKA    LRY
Sbjct:    4 IRLVLRMVAAKNLYLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYDLKQGLRQWYKKFDSFMHRIGYKRCEVDHCCYVKSFDNSYIILLLYVDDMLIAGSGIEKINNRKKQLFNMNEAKPVSTPLGSHFKLSKEQSPKTKEERDHMSKVPYASAIGSLMYIMVCTRPDIAHVVGVVSRFMSRPGKQHWKAVKWILRY 213          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5K5Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y3_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.120e-19
Identity = 55/181 (30.39%), Postives = 90/181 (49.72%), Query Frame = 0
Query:    1 MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +R + A A  +N  L + +++QA +Q++++E++++ LP+        I  L K++YGL ++   W    T  +   GF Q  AD CVFR + DG     +   ++                   +E E    +P RE VG+LMW AT    D++ A   +A++C  P  VHWKAA+  L Y
Sbjct:  587 VRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASPQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVMLAVADF----------------DENEACADVPIRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGY 751          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A438HB44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB44_VITVI)

HSP 1 Score: 94.0 bits (232), Expect = 1.330e-19
Identity = 65/207 (31.40%), Postives = 99/207 (47.83%), Query Frame = 0
Query:    4 VLASAAVKNWKLRYINVEQAHLQADIDEEIY-IELPEDN-RAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGK-------------ARFN----VTKTSMIPMVTGAKP----------LSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            VL   A KN  L  +NV+   L  D++E++Y I+L E   +   N +  LRK++YGL ++   W +KF   +   GF++  AD C + +  D               A F+    V K   +  +  AKP          LSKE  PKT  ER+ M ++PY  A+G+LM+A      D++     +++F   PG  HW+A    LRY
Sbjct:   55 VLGMVAAKNLHLEQLNVKTTFLHGDLEEDLYMIQLEEFIVQGQENLVCKLRKSLYGLKQAPRQWCKKFDSFMHRIGFKRCEADHCCYVKSFDNSYIILLLYVDDMLIAGFHSPEYVKKVLSMFNMNEAKPMSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHVVGVVSRFMSRPGKQHWEAVKWILRY 261          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A0J7KUH3_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KUH3_LASNI)

HSP 1 Score: 92.4 bits (228), Expect = 1.630e-19
Identity = 64/237 (27.00%), Postives = 108/237 (45.57%), Query Frame = 0
Query:   15 LRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRR-------IVD--------------------------------GKAR----FNVTKTSMI------------------------PMVTGAKP---LSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRY 181
            +  ++V  A+L  D++EEIY++ P++       I  LRKA+YGL +SG  W ++ +  +KE    QS A+PC++ R       ++D                                G+AR      ++K                            P+ T   P   L+K+  P  S E +EMR +PYREA+G+L++A+  A  D+++A + +++FC +P  +HW A  + LRY
Sbjct:    1 MHQMDVTTAYLHGDLEEEIYVKPPKEIPNQSGKIWRLRKAMYGLKQSGRAWNKRLSHDLKEMELIQSKANPCIYYRKTKSFLLVLDIYVDDMFVLTNDDAMMDAVKARLSEQFRMTDLGEARHFLGIRISKNEATGELYLDQETYLRKVLERYGMSDCKPVSTPCDPNQKLTKKQMPMDSAEAKEMRNVPYREAIGSLLYASQGARPDIAYAVNLVSRFCQEPRRIHWTAVKRILRY 237          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GTF6_9APHY4.590e-2232.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A5A7SIN2_CUCME1.120e-2132.31Gag/pol protein n=2 Tax=Cucumis melo var. makuwa T... [more]
A0A5A7TXU6_CUCME2.310e-2132.79Retrovirus-related pol polyprotein from transposon... [more]
A0A6H5KJP2_9PHAE5.140e-2131.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5A7T9X1_CUCME6.600e-2132.24Gag/pol protein n=1 Tax=Cucumis melo var. makuwa T... [more]
A0A6A2Y195_HIBSY8.010e-2130.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5AL16_VITVI4.570e-2028.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5Y3_9PHAE1.120e-1930.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A438HB44_VITVI1.330e-1931.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KUH3_LASNI1.630e-1927.00Retrovirus-related pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..95
e-value: 9.1E-14
score: 51.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig886contigA-nodosum_M_contig886:51088..52168 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig886.7.1mRNA_A-nodosum_M_contig886.7.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig886 50752..52225 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig886.7.1 ID=prot_A-nodosum_M_contig886.7.1|Name=mRNA_A-nodosum_M_contig886.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=183bp
MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGL
LRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNV
TKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAG
LDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2