mRNA_A-nodosum_M_contig886.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig886.7.1
Unique NamemRNA_A-nodosum_M_contig886.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.030e-53
Identity = 109/314 (34.71%), Postives = 176/314 (56.05%), Query Frame = 1
Query:    1 QVEGLHYYEASSPTPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            Q   + + E  +PT + SS+R + A A  +N  L + +++QA +Q+++++++++ LP+        I  L K++YGL ++   W    T  +   GF Q  AD CVFR + DG     +       M     P+S +      +E E    +P+RE VG+LMW AT    D++ A   +A++C  P  VHWKAA+  L Y  RT  +GIT+      G++M  +VD+++A+    RRSVSGG V+ GGG ++WFSR Q+    +++E EYV +A+++ E  FLRQV   ++         + EDNQGAI++A+N
Sbjct:    2 QRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEDDVFMRLPQGCGRLSGLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVGFLMWLATXPVSVKLT--DFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHN 313          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5K5Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y3_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.810e-47
Identity = 103/314 (32.80%), Postives = 170/314 (54.14%), Query Frame = 1
Query:    1 QVEGLHYYEASSPTPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            Q   + + E  +PT + SS+R + A A  +N  L + +++QA +Q++++E++++ LP+        I  L K++YGL ++   W    T  +   GF Q  AD CVFR + DG     +   ++                   +E E    +P RE VG+LMW AT    D++ A   +A++C  P  VHWKAA+  L Y  RT+ +G T+       ++M  +VD+++A+     RSVSGG V+ GGG ++WFSR Q     +++E+EYV +A+++ E  FLRQ    ++P        + E+NQGAI++A+N
Sbjct:  568 QRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASPQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVMLAVADF----------------DENEACADVPIRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTRWMGTTFERGVVTDMSMQVFVDADYASKAADHRSVSGGLVMYGGGYVTWFSRTQMCVTLSTTEAEYVAIADVLKEMLFLRQGWRFMLPDAGMPCIPVFEENQGAIQIAHN 865          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.190e-45
Identity = 110/323 (34.06%), Postives = 168/323 (52.01%), Query Frame = 1
Query:   40 TPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDG------------------KARFNVTKTSMIPM--VTGAKPLSKEDGPKTSN-EREEMRR-IPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            T T + M A LA     N  L + ++EQA ++++++E++Y+ LP+   A    I  L K++YGL ++   W       +   GFEQ  AD CVFR I DG                  + R +     +  +  V G + +    G K  + + +EM    P+R+ VG+LMW AT    D++ A   +A++C  P  VHW AAI  L Y  RT   GI+    T  G ++  Y D++ A+    RRSVSGG V  GGG +SWFSR Q+    +++E+EYV L ++VN+  FL Q+   ++P +      + EDNQGAI++  N
Sbjct:  951 TFTPAKMLAALACEL--NLDLYHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKLGADLNKVYGVVGGENVPMSSGVKLPDFDADEMETDYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQN 1271          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.310e-45
Identity = 110/323 (34.06%), Postives = 169/323 (52.32%), Query Frame = 1
Query:   25 EASSPTPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLC--WFRKFTDGIKEKGF-EQSHADPCVFRRIVDGKA--------------RFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            E  +PT   SS+R + A A  +N  LR+ +++QA +Q+D+DE++++ LPE         G L   I+ + E   C  + R     +  K   +      C + R  D                  F V     IP+  G K LS+ D      + EE+   P+RE +G+LMW AT    D++ A   +A++C  P  +H +A +  L Y  RT +LGIT+   +  GL+M  + D+++A+    RRSVSGG V+ GGG ISWFSR Q+    +++E+EYV LA+++ E  FLRQV   ++P        + EDNQGAI++A N
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEG-------CGRLSDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 318          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5KY90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY90_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.180e-43
Identity = 104/290 (35.86%), Postives = 159/290 (54.83%), Query Frame = 1
Query:   73 ASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            A A  +N  LR+ +++QA +Q+D+DE+I++ LPE+       I  L K++YGL  +   W       I  K  +Q++A+  V          F V     +P+  G K LS+ D      + EE+   P+RE +G+LMW AT    D++ A   +A++C  P  +HW+A +  L Y  RT DLGI++   +  GL+M  + D+++A+    RRSVSGG V+ GGG  SWFSR Q+    + + +EYV LA+++ E  FL QV   + P        + EDNQGAI +A N
Sbjct:  417 AMACKQNLSLRHFDIKQAFVQSDLDEDIFMLLPEECGRLSGMIVKLNKSLYGLKRASRQWHSHLATWIL-KISQQTYAEELVME--------FGVEYGKEVPLPVGLK-LSEFD------QVEEVLSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGISFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCSSWFSRTQKCVTLSRTVAEYVSLADVMKEVLFLEQVWRFMFP--------VFEDNQGAIHLAQN 682          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.930e-43
Identity = 114/363 (31.40%), Postives = 171/363 (47.11%), Query Frame = 1
Query:   40 TPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKA---------------------RFNVTKTSMIPM---------------------------------------VTGAKPLSKEDGPKTSN-EREEMRR-IPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            T T + M A LA     N  L + ++EQA ++++++E++Y+ LP+   A    I  L K++YGL ++   W       +   GFEQ  AD CVFR I DG                       +F       +P+                                       V G + +    G K S+ + +E+    P+RE VG+LMW AT    D++ A   +A++C  P  VHW AA+  L Y  RT   GI++   T  G ++  Y D++ A+    RRSVSGG V  GGG +SWFSR Q+    +++E+EYV L ++V E  FLRQ+   ++P +      I EDNQGAI++A N
Sbjct:  871 TFTPAKMLAALACEL--NLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQN 1231          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5KA04_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA04_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.340e-42
Identity = 113/319 (35.42%), Postives = 166/319 (52.04%), Query Frame = 1
Query:    1 QVEGLHYYEASSPTPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVF----RRIVDG-KARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            Q E + + E  +PT + S +R + A A   N  L + +VEQA ++++++E++ + LP+   A    I  L K++YGL +    W       +   GFE   AD CV     +   D   A + V     +PM +G K LS  D  + + E       P+RE VG+LMW AT    D++ A   +A++C  P  VHW AA+  L Y  RT   GI++          SA   S+ A     RRSVSGG V  GGG +SWFSR Q+    +++E+EYV L ++V E  FLRQ+   ++P +      I EDNQGAI++A N
Sbjct:  921 QREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDVEQAFVRSELEEDVDMSLPQGCGALSGMIVQLGKSLYGLRQLSRQWHAMLKKCLVALGFEPCMADACVLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISF---------QSADFASKAAD----RRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQN 1219          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.610e-42
Identity = 113/363 (31.13%), Postives = 170/363 (46.83%), Query Frame = 1
Query:   40 TPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKA---------------------RFNVTKTSMIPMVTGAK---------PLSKEDGPKTSNER--------------------------------EEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMANN 942
            T T + M A LA     N  L Y +VEQA ++++++E++Y+ LP+   A    I  L +++YGL ++   W       +   GFEQ  AD CVFR I  G                       +F       +P+    +           SKE G  T +++                                EE    P+RE VG+LMW AT    D++ A   +A++C  P  VHW AA+  L Y  RT ++G+++   T  G ++  Y D++ A+    RRSVSGG V  GGG +SWFSR Q+    +++E+EYV L ++  E  FL+QV   I+P +      + EDNQGAI++A N
Sbjct: 1170 TFTPAKMLAALACEL--NLDLCYFDVEQAFVRSELEEDMYMRLPQGCGALSGMIVKLGRSLYGLRQASRQWHAMLKRCLVALGFEQCTADACVFRLIEGGGVDLILEVHVDDIFAVGERERCEKFGADLNKSVPVKNLGELRWYSGCFDERSKETGRLTISQQTFTDELAAEYGVAGGKSVPMSSVVKLSDFDADEEATDFPFRELVGSLMWLATQTRPDIANAVWAVARYCASPKQVHWDAAMGILGYAKRTTNMGVSFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRRQKCVTLSTTEAEYVALGDVAKEILFLKQVWRFILPKVSMPCIPVFEDNQGAIQLAQN 1530          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.650e-41
Identity = 107/340 (31.47%), Postives = 162/340 (47.65%), Query Frame = 1
Query:    7 EGLHYYEASSPTPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGK------------------------------ARFNVTKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQVEESIIPTLKSCTTSIMEDNQGAIEMA 936
            EG+ ++E  SP P+ +S+R + A A V +W L + + EQA +Q+++DE ++I LP    A    +  LR+++YGL ++   W      G+K  GFE   AD CV R I  G                               A+F VT     PMV G K L + D  +   +       P+R  VG LMW A     D+  A   +A++   P  +HW+AA+  L +   T   GIT+   T  G  M  +VDS+ A     RRSVSG  V+  G  + +  R Q+    +S+E+EYV +++ + E  FLR + + + P      T + EDN GA  +A
Sbjct:  597 EGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQAVAEKIVAKFGVTTDKETPMVVGLK-LEQYDADEPDVDE------PFRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLA 929          
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Match: A0A5A7SIN2_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SIN2_CUCME)

HSP 1 Score: 158 bits (400), Expect = 1.060e-39
Identity = 106/325 (32.62%), Postives = 167/325 (51.38%), Query Frame = 1
Query:    1 QVEGLHYYEASSPTPTASSMRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPED--NRAFPNTIGLLRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNVTKTSMIPMV-------TGAKP-----LSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAGLDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*RTKDLGITYGGITSRGLTMSAYVDSEHATCPDSRRSVSGGAVILGGGTISWFSRAQRVTASASSESEYVVLAEIVNETKFLRQV--EESIIPTLKSCTTSIMEDNQGAI 927
            Q E + Y E  SP     S+R +L+ A   ++++  ++V+ A L  +++E I++  PE    R     +  L ++IYGL ++   W  +F   IK  GF+Q+  +PC++++I  GK  F V     I  +       T  K      LSKE  PKT  E E+MRRIPY  AVG+LM+A      D+ +A   ++++  +PG  HW A    L+Y  RT+D  + YG   ++ L ++ Y DS+  T  DSR+S  G    L GG + W S  Q   A ++ E+EYV   E V E  +LR+   +  ++P +    T +  DN  A+
Sbjct:  613 QRERVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSKPEGFITRGQEQKVCKLNRSIYGLKQASKSWNIRFDIAIKSYGFDQNVDEPCLYKKINKGKVAFLVLYVDDILFIGNDMGYLTDVKAWHGVHLSKEQCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYG---AKDLILTGYTDSDFQTDKDSRKSTLGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAVKEAVWLRKFLHDLEVVPNMNLPIT-LYYDNSEAV 933          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig886.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJP2_9PHAE1.030e-5334.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5Y3_9PHAE4.810e-4732.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6V8_9PHAE2.190e-4534.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L0Z9_9PHAE5.310e-4534.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY90_9PHAE1.180e-4335.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE2.930e-4331.40Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KA04_9PHAE1.340e-4235.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LE52_9PHAE2.610e-4231.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAQ1_9PHAE2.650e-4131.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A5A7SIN2_CUCME1.060e-3932.62Gag/pol protein n=2 Tax=Cucumis melo var. makuwa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig886contigA-nodosum_M_contig886:50752..52225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo130920
PFAMsChromo,RVP_2,RVT_1,Retrotrans_gag,rve
Model size942
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.68e-22
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH7N@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size549
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870299.7644432-UTR-A-nodosum_M_contig886:50751..510871680870299.7644432-UTR-A-nodosum_M_contig886:50751..51087Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig886 50752..51087 -
1680870299.8102124-UTR-A-nodosum_M_contig886:52168..522251680870299.8102124-UTR-A-nodosum_M_contig886:52168..52225Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig886 52169..52225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870299.7841783-CDS-A-nodosum_M_contig886:51087..513481680870299.7841783-CDS-A-nodosum_M_contig886:51087..51348Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig886 51088..51348 -
1680870299.7945273-CDS-A-nodosum_M_contig886:51880..521681680870299.7945273-CDS-A-nodosum_M_contig886:51880..52168Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig886 51881..52168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig886.7.1prot_A-nodosum_M_contig886.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig886 51088..52168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig886.7.1

>prot_A-nodosum_M_contig886.7.1 ID=prot_A-nodosum_M_contig886.7.1|Name=mRNA_A-nodosum_M_contig886.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=183bp
MRAVLASAAVKNWKLRYINVEQAHLQADIDEEIYIELPEDNRAFPNTIGL
LRKAIYGLVESGLCWFRKFTDGIKEKGFEQSHADPCVFRRIVDGKARFNV
TKTSMIPMVTGAKPLSKEDGPKTSNEREEMRRIPYREAVGALMWAATMAG
LDLSFAAHNLAKFCDDPGPVHWKAAIKALRYF*
back to top

mRNA from alignment at A-nodosum_M_contig886:50752..52225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig886.7.1 ID=mRNA_A-nodosum_M_contig886.7.1|Name=mRNA_A-nodosum_M_contig886.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1474bp|location=Sequence derived from alignment at A-nodosum_M_contig886:50752..52225- (Ascophyllum nodosum dioecious)
CAGGTGGAAGGGTTGCACTATTATGAGGCGTCCTCTCCCACTCCTACGGC CTCTAGCATGAGGGCAGTACTTGCCTCTGCAGCCGTGAAGAATTGGAAAC TCCGATACATCAATGTCGAGCAAGCACATCTTCAGGCCGACATCGATGAA GAGATCTACATCGAACTACCCGAGGACAACCGCGCGTTTCCGAACACTAT CGGCTTGCTGAGGAAGGCTATCTATGGGTTGGTGGAATCAGGATTATGTT GGTTCCGAAAATTCACAGACGGTATCAAAGAGAAGGGCTTCGAACAGTCC CACGCAGATCCATGCGTGTTCAGGAGAATCGTCGACGGCAAAGCCGTGAT CGCGTCGACGACATACTGTTGGCGAGCAAAACAAAGGAAAATGAGGGACG GACATTGTCAGATCTCAGGTTATGCTTCAAGATTAAAGACCTGGGCGAAG CGGAATTCTACCTAGGATGTCATATCACGAGGAACAGGGAAGCAAGGACA TTGACCTTCGACCAACACATCTATTGTTTGGTTGCACTTCTCGGACCGTT TCATATGCAAGGGAGTTGATATCAGTATTCATGTGTTGCACACAGTGGGT TGGATTTGATACCTACTTGTATAGACTAGGTCATTACAATTGTACTGTAC TCATAATCAGTGAGCGTGTGATAGAGAGAGAGTATAAGAGACCCTATCTG TTGGGTGTGGTTATGTTCGGTGGCACGATCATGTGCTACCCAGGACGCCG TTAATAAAGCTAATGTGTGTACACCAACTATATCAGCAGGGATAAATCGC CCGCCTCATCCAGACCATCTCGCATATACTCTTGAGCTTCGGCACTACGA AACATCTATGCCGAGACCCTGACAAAGCGATTTAATGTGACCAAGACTAG CATGATTCCGATGGTGACAGGGGCGAAGCCTCTATCTAAGGAGGACGGCC CTAAAACCTCCAACGAAAGGGAAGAAATGCGTCGCATCCCATACAGGGAG GCAGTGGGGGCCCTGATGTGGGCGGCGACCATGGCTGGACTAGATCTTTC GTTCGCGGCGCATAACCTAGCTAAGTTCTGCGACGATCCCGGACCAGTAC ACTGGAAGGCGGCAATAAAAGCGCTACGATACTTCTGACGGACGAAGGAC CTCGGTATCACCTATGGCGGAATTACGTCAAGGGGTTTGACCATGTCAGC ATACGTCGACTCCGAGCATGCAACATGCCCGGACAGCCGACGTTCGGTCT CAGGTGGGGCAGTTATACTGGGAGGTGGCACGATAAGTTGGTTCTCACGC GCACAGAGGGTAACAGCGTCGGCATCATCCGAGTCGGAGTATGTGGTGCT TGCGGAAATCGTGAATGAAACTAAGTTCCTTCGTCAGGTAGAAGAGTCCA TCATACCTACTTTGAAGAGCTGCACGACTTCAATCATGGAGGATAATCAA GGCGCAATCGAGATGGCGAACAAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig886:50752..52225-

>mRNA_A-nodosum_M_contig886.7.1 ID=mRNA_A-nodosum_M_contig886.7.1|Name=mRNA_A-nodosum_M_contig886.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=549bp|location=Sequence derived from alignment at A-nodosum_M_contig886:50752..52225- (Ascophyllum nodosum dioecious)
ATGAGGGCAGTACTTGCCTCTGCAGCCGTGAAGAATTGGAAACTCCGATA
CATCAATGTCGAGCAAGCACATCTTCAGGCCGACATCGATGAAGAGATCT
ACATCGAACTACCCGAGGACAACCGCGCGTTTCCGAACACTATCGGCTTG
CTGAGGAAGGCTATCTATGGGTTGGTGGAATCAGGATTATGTTGGTTCCG
AAAATTCACAGACGGTATCAAAGAGAAGGGCTTCGAACAGTCCCACGCAG
ATCCATGCGTGTTCAGGAGAATCGTCGACGGCAAAGCCCGATTTAATGTG
ACCAAGACTAGCATGATTCCGATGGTGACAGGGGCGAAGCCTCTATCTAA
GGAGGACGGCCCTAAAACCTCCAACGAAAGGGAAGAAATGCGTCGCATCC
CATACAGGGAGGCAGTGGGGGCCCTGATGTGGGCGGCGACCATGGCTGGA
CTAGATCTTTCGTTCGCGGCGCATAACCTAGCTAAGTTCTGCGACGATCC
CGGACCAGTACACTGGAAGGCGGCAATAAAAGCGCTACGATACTTCTGA
back to top