prot_A-nodosum_M_contig880.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig880.6.1
Unique Nameprot_A-nodosum_M_contig880.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length95
Homology
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A6H5JR21_9PHAE (Lipoyl-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR21_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.450e-34
Identity = 66/85 (77.65%), Postives = 72/85 (84.71%), Query Frame = 0
Query:    1 MAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQAD-TPVRHRHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQL 84
            MAGADFV P+K SH+PLIKFVGKR+ L EK+   + D  P RHRHSPGALDFSQIVGGAMFGRP MSEEEM AVDSGGAEAAPQ+
Sbjct:  206 MAGADFVAPRKKSHKPLIKFVGKRALLTEKKDKKEKDGLPARHRHSPGALDFSQIVGGAMFGRPAMSEEEMEAVDSGGAEAAPQV 290          
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A835ZF23_9STRA (Single hybrid motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF23_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.730e-8
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0
Query:   46 PGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQ 83
            PGALDF QIVGGA+ GRP +S+EEM AV+SGGA  AP+
Sbjct:  239 PGALDFEQIVGGALVGRPALSQEEMDAVESGGASVAPR 276          
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S2WGR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGR8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.450e-7
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 0
Query:    7 VPPKKSSHEPLIKFVGKRSRLKEK-------EASAQADTPVRH-------RHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGA 78
            V P  S+  P I F+GK    + K       E+ +    PV          H+PGA+D   + GGAMFGRPP+SE EM AV++GGA
Sbjct:   29 VAPPSSARVPSICFLGKEGWARRKHGKADIVESRSSVAMPVPSSLLAEEINHTPGAVDQWTLAGGAMFGRPPISEAEMEAVETGGA 114          
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S2WFW0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFW0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.610e-6
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 0
Query:    7 VPPKKSSHEPLIKFVGKRSRLKEK-------EASAQADTPVRH-------RHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGA 78
            V P  S+  P I F+GK    + K       E+ +    PV          H+PGA+D   + GGAMFGRPP+SE EM AV++GGA
Sbjct:  136 VAPPSSARVPSICFLGKEGWARRKHGKADIVESRSSVAMPVPSSLLAEEINHTPGAVDQWTLAGGAMFGRPPISEAEMEAVETGGA 221          
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A4D9D5P5_9STRA (Lipoyl-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5P5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.530e-6
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0
Query:   16 PLIKFVGKRSRLKEKEASAQA----------DTPVRH---RHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGA 78
            PLIKF+GKRS ++++++SAQ             P RH   R +PG   F ++     FG PP++EEEM AV+SGGA
Sbjct:  126 PLIKFLGKRSLMRKQDSSAQXXXXXXXARSPSLPARHEDSRSTPGVKTFIELP--PRFGHPPVTEEEMEAVESGGA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JR21_9PHAE3.450e-3477.65Lipoyl-binding domain-containing protein n=2 Tax=E... [more]
A0A835ZF23_9STRA6.730e-871.05Single hybrid motif-containing protein n=1 Tax=Tri... [more]
A0A7S2WGR8_9STRA3.450e-740.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WFW0_9STRA1.610e-640.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D5P5_9STRA2.530e-643.42Lipoyl-binding domain-containing protein n=1 Tax=N... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig880contigA-nodosum_M_contig880:92534..93848 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig880.6.1mRNA_A-nodosum_M_contig880.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig880 91896..95329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig880.6.1 ID=prot_A-nodosum_M_contig880.6.1|Name=mRNA_A-nodosum_M_contig880.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
MAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQADTPVRHRHSPGALD
FSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQLRYIDGSRWAS*
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