prot_A-nodosum_M_contig88.39.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig88.39.1
Unique Nameprot_A-nodosum_M_contig88.39.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length234
Homology
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BLAST of mRNA_A-nodosum_M_contig88.39.1 vs. uniprot
Match: A0A6H5K8D7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D7_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 4.880e-64
Identity = 114/244 (46.72%), Postives = 147/244 (60.25%), Query Frame = 0 
Query:    2 RRRLVLPALLCLLVAIRVCDG--KKSKRWTYPRPQWPVPEHRMDTNPCQLFLWDSQSAAKFCECSRLLKATAKTSLWEDGHKQLWLRIPYASRLLQLFPCQQHSLSRCVRCGHDCWEHVRWAAQRRRDRPFEKLLLDRASHGIPDEAPLDYREVSVLIGPKTASARGMDVDAHKNGPRNGPGN---------------LG------RALAVVAEAQRTSTLQVAGISVTSAAARAAFKEVQDLK 222
            R R   P +  +++ +  C+G  KKSKRWTYPRPQWPVP HRMD  PC+ FLWD  SAA+FCEC+R L++ A  +LWED H QLWLR+P++S LL+LFPCQQHSL+RC +CGH+   HV    +RR+D  ++K + D A   +      DYR  SV    K  S   +D      G  +G GN               +G      R LAV+AEAQR + LQ +GI+VTS  AR+AFK V D K
Sbjct:    3 RLRCFQPVVGLIVILLLCCNGSAKKSKRWTYPRPQWPVPGHRMDAVPCRWFLWDVASAARFCECTRHLESVADQTLWEDSHGQLWLRVPFSSPLLRLFPCQQHSLTRCAKCGHEYRAHVEHTLKRRKDGDYDKFIRDHARR-VGGRGAQDYRGGSVFSDQKRTSRERVDASVGSLGSSSGNGNNSXXXXXXXXXXXGGIGNGSGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEK 245
[Close]
BLAST of mRNA_A-nodosum_M_contig88.39.1 vs. uniprot
Match: A0A835Z847_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z847_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.180e-16
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 0 
Query:    3 RRLVLPALLCLLVAIRVCDGKKSKRWTYPRP-------------QWPVPEHRMDTNPCQLFLWDSQSAAKFCECSRLLKATAKTSLWEDGHKQLWLRIPYASRLLQLFPCQQHSLSRCVRCGHDCWEHVRWAAQRRRDRPFEKLL 134
            +R+ L  LL L      CD     R   P P             Q P    +    PC+ FLW++ SA ++C C+RL + T +  L+E    Q +LR+   + L +L+PC++HS++RC+ CGH   EH+   A     RP + +L
Sbjct:    5 QRVALLYLLILATLHTCCDASSDSRRRQPAPSGRRMXXXXXXXXQEPTQFTKRAEGPCRFFLWNASSALQWCTCTRLYEQTRRDWLYEGRGGQRFLRVTANNPLRRLYPCERHSMNRCLLCGHSFREHIERHAISGGPRPIDAVL 149
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.39.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8D7_9PHAE4.880e-6446.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z847_9STRA5.180e-1631.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:332732..336385 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.39.1mRNA_A-nodosum_M_contig88.39.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig88 332588..336877 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig88.39.1 ID=prot_A-nodosum_M_contig88.39.1|Name=mRNA_A-nodosum_M_contig88.39.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=234bp
MRRRLVLPALLCLLVAIRVCDGKKSKRWTYPRPQWPVPEHRMDTNPCQLF
LWDSQSAAKFCECSRLLKATAKTSLWEDGHKQLWLRIPYASRLLQLFPCQ
QHSLSRCVRCGHDCWEHVRWAAQRRRDRPFEKLLLDRASHGIPDEAPLDY
REVSVLIGPKTASARGMDVDAHKNGPRNGPGNLGRALAVVAEAQRTSTLQ
VAGISVTSAAARAAFKEVQDLKTAKVPKRKRKH*
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