mRNA_A-nodosum_M_contig88.39.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig88.39.1
Unique NamemRNA_A-nodosum_M_contig88.39.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig88.39.1 vs. uniprot
Match: A0A6H5K8D7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 9.370e-62
Identity = 114/245 (46.53%), Postives = 148/245 (60.41%), Query Frame = 1 
Query:  145 MRRRLVLPALLCLLVAIRVCDG--KKSKRWTYPRPQWPVPEHRMDTNPCQLFLWDSQSAAKFCECSRLLKATAKTSLWEDGHKQLWLRIPYASRLLQLFPCQQHSLSRCVRCGHDCWEHVRWAAQRRRDRPFEKLLLDRASHGIPDEAPLDYREVSVLIGPKTASARGMDVDAHKNGPRNGPGN---------------LG------RALAVVAEAQRTSTLQVAGISVTSAAARAAFKEVQDLK 810
            +R R   P +  +++ +  C+G  KKSKRWTYPRPQWPVP HRMD  PC+ FLWD  SAA+FCEC+R L++ A  +LWED H QLWLR+P++S LL+LFPCQQHSL+RC +CGH+   HV    +RR+D  ++K + D A   +      DYR  SV    K  S   +D      G  +G GN               +G      R LAV+AEAQR + LQ +GI+VTS  AR+AFK V D K
Sbjct:    2 VRLRCFQPVVGLIVILLLCCNGSAKKSKRWTYPRPQWPVPGHRMDAVPCRWFLWDVASAARFCECTRHLESVADQTLWEDSHGQLWLRVPFSSPLLRLFPCQQHSLTRCAKCGHEYRAHVEHTLKRRKDGDYDKFIRDHARR-VGGRGAQDYRGGSVFSDQKRTSRERVDASVGSLGSSSGNGNNSXXXXXXXXXXXGGIGNGSGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEK 245
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BLAST of mRNA_A-nodosum_M_contig88.39.1 vs. uniprot
Match: A0A835Z847_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z847_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.040e-15
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:  151 RRLVLPALLCLLVAIRVCDGKKSKRWTYPRP-------------QWPVPEHRMDTNPCQLFLWDSQSAAKFCECSRLLKATAKTSLWEDGHKQLWLRIPYASRLLQLFPCQQHSLSRCVRCGHDCWEHVRWAAQRRRDRPFEKLL 546
            +R+ L  LL L      CD     R   P P             Q P    +    PC+ FLW++ SA ++C C+RL + T +  L+E    Q +LR+   + L +L+PC++HS++RC+ CGH   EH+   A     RP + +L
Sbjct:    5 QRVALLYLLILATLHTCCDASSDSRRRQPAPSGRRMXXXXXXXXQEPTQFTKRAEGPCRFFLWNASSALQWCTCTRLYEQTRRDWLYEGRGGQRFLRVTANNPLRRLYPCERHSMNRCLLCGHSFREHIERHAISGGPRPIDAVL 149
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8D7_9PHAE9.370e-6246.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z847_9STRA4.040e-1531.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:332588..336877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1338
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003510.1
Cds size702
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.39.1prot_A-nodosum_M_contig88.39.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig88 332732..336385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870284.0894766-UTR-A-nodosum_M_contig88:332587..3327311680870284.0894766-UTR-A-nodosum_M_contig88:332587..332731Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig88 332588..332731 +
1680870284.1523728-UTR-A-nodosum_M_contig88:336385..3368771680870284.1523728-UTR-A-nodosum_M_contig88:336385..336877Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig88 336386..336877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870284.1022704-CDS-A-nodosum_M_contig88:332731..3328261680870284.1022704-CDS-A-nodosum_M_contig88:332731..332826Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 332732..332826 +
1680870284.1167245-CDS-A-nodosum_M_contig88:335005..3351421680870284.1167245-CDS-A-nodosum_M_contig88:335005..335142Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 335006..335142 +
1680870284.1305053-CDS-A-nodosum_M_contig88:335477..3356411680870284.1305053-CDS-A-nodosum_M_contig88:335477..335641Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 335478..335641 +
1680870284.1409495-CDS-A-nodosum_M_contig88:336079..3363851680870284.1409495-CDS-A-nodosum_M_contig88:336079..336385Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 336080..336385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig88.39.1

>prot_A-nodosum_M_contig88.39.1 ID=prot_A-nodosum_M_contig88.39.1|Name=mRNA_A-nodosum_M_contig88.39.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=234bp
MRRRLVLPALLCLLVAIRVCDGKKSKRWTYPRPQWPVPEHRMDTNPCQLF
LWDSQSAAKFCECSRLLKATAKTSLWEDGHKQLWLRIPYASRLLQLFPCQ
QHSLSRCVRCGHDCWEHVRWAAQRRRDRPFEKLLLDRASHGIPDEAPLDY
REVSVLIGPKTASARGMDVDAHKNGPRNGPGNLGRALAVVAEAQRTSTLQ
VAGISVTSAAARAAFKEVQDLKTAKVPKRKRKH*
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mRNA from alignment at A-nodosum_M_contig88:332588..336877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig88.39.1 ID=mRNA_A-nodosum_M_contig88.39.1|Name=mRNA_A-nodosum_M_contig88.39.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4290bp|location=Sequence derived from alignment at A-nodosum_M_contig88:332588..336877+ (Ascophyllum nodosum dioecious)
CTCGGATGATATGAGACTGTCAGAGTCGGTCCAATCAAACCCTCGCGTGA
CATGTACAGCACTTTTTATTAGCCTTCTAGGTTAGTACCTTGAGAGGAAT
AGAAACACGAACTACTTCCGTCCCTCGGTTGCTTCTCAGAAGGGATGCGG
CGTAGATTGGTGCTGCCCGCGTTACTTTGTCTTCTGGTCGCAATCCGCGT
CTGTGATGGGAAGAAGTCGAAACGATGGACCTATCCCAGGTTTGTTTTTT
GGAGAAAAAAAAATCGATCGTAAGAGTAATACAACAGGCAACTTACATAA
CACGTTGGGGAAAAACTCAGTGCAGCGGCGGTCAAACGGCGGTCGTCTAC
AATGGTCCGAAGTCGGTATGCATAGTACTTAGAAAGGTGTTACAGCAGTA
CTGGAGCAGACATTCTTCGGTCCGTACGACTATAAAGAAGTCAGTGTAAA
AAGTGCCTTTGGAGCCGAAGACCCACGTTTTATGAAAATACTGTCTGTTC
TAATAATATTACTTGGATACAGAACGGAACTGAGCACCACCAGTTCCCTC
CTAAACATACAGTGTCTGAGTTCAGTAGTCGTTGGTAAGACGGTGCGACG
ATGATCGCTCGGCGGTCATATTGCTCGTGTACGGTAAACAAATATTTTTG
CAACGGTACCTGTGAAACAAAGTTGGTGCTTCCAAGGTTCAATCGTGGAA
CTGACCTTCAGTCAATACCTGGTTTAGCAATCTGTGCACACTTGCTATTA
ATATGAATAGTGCGGAAGCCGTGATTCCGATTCTTGTCAAAGGAGGATTT
GTATATTGGTTTTCGTAGCGGAAAGCGTGAGAACGTGAGTAAGTAAAATT
CAACCATTGGGTTGACGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAA
AAAAAAAATCGTAGGGCGAGAACCGGGGAGAGATGGGAAGGTCCCCTTAG
TGACCACAGGCAGGGCGGCAACGTTGAGGCCCATCGGCTATAAGAGAGAA
ACAAACAAAAACAAACAACTATCTGTAGCGGAAACTCTACCGCATTACTG
TACGTGGTCGCTCTGTGTGGTACAGTACTACTTTTCAGTGGTGGCGCATG
CAGGGACGTTTGGTAAGCGCTATTAAAATTAAGAAAGCGCTACAGTAGTC
AAGTACCCGGTGTTGAATCATCGTGTATGTATGTGTGGTAATCACATATA
TATATGTATGGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGT
TGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGAATATTCCCCTG
TCCCCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTCC
CGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTAAATCTGGTGCTT
ACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTATGAAACCG
CCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTA
CCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGAGCCAGTAAACCTC
AAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCATTTA
ATATTCGCCTCTCTTTCCCACACGAACTATTGGTATGAAGTGGGCATGTT
GAAAGTACCGGCGGTCATAGCAGAGTATGTTATATGTATGTATGGTCATC
ACATGTAGCAGAGTATGGATCAACCGGGTAAGGTTTGCCTGATCGTGGTC
GGCTGAACAGAGAAAATGAACTTTTCCCTGTCCCCCGTTCGCGCCTGAGA
ATTTGGTCTCGCGAGACGGCTTCGGCCGTCCCATCCCGCGTCAGCCTGCT
CATTCTCCACACTCAGGCTGAATCTGGTGCTTACTCGCGGGATTCCTCCC
GTGAGAAGAGGAGACCACCGCGTTTCAGACGGGCCTCCTTGTAGGAGGCA
GACTATGTAGCTTTGAGTACGACATCCGCCGGCCAGTTTATCGTGTGCTA
CCTGGTTCTCCGGAGCGTACAGAGCATGTTTCGTAGATCTGTACAGAACA
GGTCTCGTCGAGTCCGCTCGCAGGTACAAACTCAGACGGACTCGTTGCAG
AGGGAAATACGAATCATCAGTAGGAAGTCGGGCAGTCAATCGTGCAACCT
GCTAGTTCTTCGGAGTGCGAAAGATTGCGTGTACTTGTACGGAACGTACC
TCGTCGAGCCCACACGCAGATCAAAATGTGTGGTCAGAATACGGAGAGTT
TGAGTGGCATAAGGAATGAAGTGAAGCGCCGTCTTTTCAACCGGTTGCAC
CACGTACAGCTCAAAAACGTGGAACGGCTAGAGAAATAGAGAGAAGTCAG
CCCCCTTGCTGATGAAGTCAATTCGTTGCCTGGACCATATACCCGGAGAG
ACCGTCCGTTTGCCGCAGACCGCAGTGGCCGGTGCCGGAGCACCGAATGG
ACACCAATCCTTGTCAGCTTTTTCTCTGGGACTCGCAATCTGCGGCGAAG
TTCTGCGAGTGCAGTAGGCTCTTGAAGGCCACAGCGAAGACTTCGCTTTG
GGAAGGTGAGGTAGAGGAGAAGGGGGGGAAGGGTTGCTTGATTTACAGGT
TTGAGGTCGCCAACAGACAGCTGCCGTGGGTGGTTCAAGAGGGTCCGGGG
CGCGAGAGCGAGATTCCTGCCTGCTCTCGGTACTCGTAGGTTCGAATGAA
GATTACACGTACGTTTCCCCCGCGGTGGTACCGTCGCAACGATATATGCT
GAAACAGCGATGCCGCTGTTGGACATGTGGGTACGTTTGCGACGATAGCG
GCGCTGCTTGTGCTGTGGTAATCCTCACCGATTTTCCTCGGTCGTGTGTT
CATTTTCCCAAACTCTCGACGTCGTCTCACACGGCGGCAGACGGTCACAA
ACAGCTGTGGCTGCGAATACCGTACGCGAGCAGATTGCTGCAACTATTCC
CATGTCAGCAGCACAGCCTCAGCCGCTGCGTTAGGTGTGGCCACGACTGC
TGGGAGCATGTGCGGTGGGCCGCTCAGAGGCGTCGCGACCGACCGTTCGA
AAAGGTCTGCCAACCTCCGACGGAATCATTTGTACTATCGTCAGCTCAGC
AGTGATAAACACGTGCCCTCATTGTTGGATTCAGTAAAAAGTAAGTTTGA
CCTCTAGTATTGTTTTTCATGAGGCTGTAATCGAGTGGTCGCCGTGAAGA
TGGTCGAGAGGTTATTTTCGCCGCGCTGGCAAGGCGCGCGTCGAGCGTAT
TCAAGTACTCGTATAACGCAGTGAAACATTTACCCCCTGTTCTGCGTGTC
AGGGATTTGAACAACCAGCTCCCGGGAAACTGAAACGTCTCTACAACTGC
GCTCTCTTTCGCGGTAACATCCATCTCGAGTTTTTCATTATCACGCCACA
GTTCCCGCGTTTTCATCGCCTACTTCTCTCCCCTTCGCCCCCACGCGCCC
CCTCTCTCGATCCACCCAAACCATACATCCCGATTGTCCTAGCTCCTTCT
TGATCGAGCATCGCACGGGATTCCCGATGAAGCACCGCTAGATTATCGTG
AAGTTTCCGTTCTGATTGGTCCGAAGACTGCAAGCGCCCGGGGGATGGAC
GTGGACGCACATAAAAACGGCCCGAGAAACGGTCCCGGGAACTTGGGGAG
GGCTCTCGCGGTGGTCGCCGAGGCTCAACGGACTTCCACGCTGCAGGTCG
CGGGGATCAGTGTGACTTCAGCGGCCGCCCGCGCGGCGTTCAAGGAAGTC
CAGGATTTGAAGACCGCCAAGGTGCCGAAGCGAAAAAGGAAACATTAGGT
GAAGAGCGGCAAGACGGGACTGCTTCAAGGGAGCCACTGAGGAGGCGTTG
TCGACGGCGAAAATGGAGCCGATGAGGAGCTACGTACGGAACGGTGCTGA
AGCGTACGCTACGGCGTCCAGTGGGCTCAAGTTTCTTGATCGCCCACTTA
TCGCGAACCAATCGCGATGCGCTATGATATAGAGTGTTTCAACGAATAGG
GGGGGGCGGGGATACGACGATTCCGTCCCCGAGGTCACCAAACAACCCCT
TCCGGGGATAGATCTACATGATCCCCTGCATGGTCGGCAAGCTTGCCCCG
AATCCAACTCATTTCACCAAGGGGCTGGTCAAATAAATACCCGGGAGGGG
CTATTTTTGTGCCATCCCCTCCCAAAACGGGGACAAAATTGTGACACCCC
CCCCCCCATCGTTGAACGTCTCGATACGAAACGGTGCGGTTCAGCTGGCG
GAGTTGACGCATCATCCAGACGGATCGCGGGGAACTCTAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig88:332588..336877+

>mRNA_A-nodosum_M_contig88.39.1 ID=mRNA_A-nodosum_M_contig88.39.1|Name=mRNA_A-nodosum_M_contig88.39.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at A-nodosum_M_contig88:332588..336877+ (Ascophyllum nodosum dioecious)
ATGCGGCGTAGATTGGTGCTGCCCGCGTTACTTTGTCTTCTGGTCGCAAT
CCGCGTCTGTGATGGGAAGAAGTCGAAACGATGGACCTATCCCAGACCGC
AGTGGCCGGTGCCGGAGCACCGAATGGACACCAATCCTTGTCAGCTTTTT
CTCTGGGACTCGCAATCTGCGGCGAAGTTCTGCGAGTGCAGTAGGCTCTT
GAAGGCCACAGCGAAGACTTCGCTTTGGGAAGACGGTCACAAACAGCTGT
GGCTGCGAATACCGTACGCGAGCAGATTGCTGCAACTATTCCCATGTCAG
CAGCACAGCCTCAGCCGCTGCGTTAGGTGTGGCCACGACTGCTGGGAGCA
TGTGCGGTGGGCCGCTCAGAGGCGTCGCGACCGACCGTTCGAAAAGCTCC
TTCTTGATCGAGCATCGCACGGGATTCCCGATGAAGCACCGCTAGATTAT
CGTGAAGTTTCCGTTCTGATTGGTCCGAAGACTGCAAGCGCCCGGGGGAT
GGACGTGGACGCACATAAAAACGGCCCGAGAAACGGTCCCGGGAACTTGG
GGAGGGCTCTCGCGGTGGTCGCCGAGGCTCAACGGACTTCCACGCTGCAG
GTCGCGGGGATCAGTGTGACTTCAGCGGCCGCCCGCGCGGCGTTCAAGGA
AGTCCAGGATTTGAAGACCGCCAAGGTGCCGAAGCGAAAAAGGAAACATT
AG
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