prot_A-nodosum_M_contig8769.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8769.1.1
Unique Nameprot_A-nodosum_M_contig8769.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length550
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8769.1.1 vs. uniprot
Match: A0A6H5J9Z0_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.550e-14
Identity = 53/142 (37.32%), Postives = 76/142 (53.52%), Query Frame = 0 
Query:   32 QPSTAQAGFRAIRGEASPR--RTGLSNCSVCDTKFTIFEHRHMCQKCQEPVCNRCSRSRKVFRAGTKPKRVCDDCVKTF-----PSATKMLSDMSNTI---ESENRSRLTLPASDAA---DTCAERTIVSPNPASA-FFGIG 159
            +P     GFR I  + +P   +T L+ C+VC  +FT   HRH C+ C + VCN C++SRKV RA T PKRVCD C++       P+ TK  +   + +   + + R  LT+  SD +   D  A   +    PA+A FFG G
Sbjct:   30 KPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRVCDTCIQNCWTPRTPAVTKPAAAAGSVVTKADGDRRVSLTVSTSDGSCPVDATATAPLSPGTPAAAGFFGPG 171
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8769.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9Z0_9PHAE7.550e-1437.32FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000306FYVE zinc fingerSMARTSM00064fyve_4coord: 46..110
e-value: 0.0011
score: 19.5
IPR000306FYVE zinc fingerPFAMPF01363FYVEcoord: 54..107
e-value: 7.3E-8
score: 32.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 48..123
e-value: 6.8E-13
score: 50.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 487..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableCDDcd00065FYVE_like_SFcoord: 56..104
e-value: 1.15532E-14
score: 66.4016
IPR017455Zinc finger, FYVE-relatedPROSITEPS50178ZF_FYVEcoord: 51..109
score: 10.660436
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 53..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8769contigA-nodosum_M_contig8769:1071..4045 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8769.1.1mRNA_A-nodosum_M_contig8769.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8769 778..4345 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8769.1.1 ID=prot_A-nodosum_M_contig8769.1.1|Name=mRNA_A-nodosum_M_contig8769.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=550bp
MTADSAASMNDHNEPASPPRTTSERTARPGRQPSTAQAGFRAIRGEASPR
RTGLSNCSVCDTKFTIFEHRHMCQKCQEPVCNRCSRSRKVFRAGTKPKRV
CDDCVKTFPSATKMLSDMSNTIESENRSRLTLPASDAADTCAERTIVSPN
PASAFFGIGMVGMPSSRTLPPPTPAGGDDSAPKPLATAFARLQVGVKAFF
GGRRASGDNVENKKPDAQIAAATVKTHPSSSSLPPAQQHDRLQGDMELVT
NGGQGQAGSDDKGPDFDSAMSTAPVVPAVATTEMQEDAEASYAQDTNEAD
TFDRAVLGLDVSHFSSAAADTPTNYYTPATAAPAHYKEDVQKPVHNEMEA
GDAVALCPHKTNEGGTIDGALVELKITAAEPTTGANSTPFLPASSPSIAT
PASPSTTAILSQDQEVVRNEVAVEATDGAQAVETSKNDIVNGAELKAAET
DAPVTTTVDVLAGAAPSTGIPAFAAPELSPEEVHETVHEEVAKKDSEASD
TSGTASSASTWGKKSIARSVWMHFNTGIYGWLAAVSVGLAVGLLLLERN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
IPR011011Znf_FYVE_PHD