prot_A-nodosum_M_contig863.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig863.18.1
Unique Nameprot_A-nodosum_M_contig863.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length177
Homology
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A438HF44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HF44_VITVI)

HSP 1 Score: 129 bits (323), Expect = 2.590e-33
Identity = 73/178 (41.01%), Postives = 108/178 (60.67%), Query Frame = 0
Query:    1 MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAV--GEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            +R+R  G LKL Q  Y+  +  +FN+    +  A +  G+K  SK   PQ + E EEM+  PY   VG+LM+A   TRPD+A     LG++  NPG  HW+AAK+ L+YL+ TKD+ +TY+ T  S   +    DADFA C D ++S +G   ++ GGA+SW S  Q +TA+++ E+E
Sbjct:   93 LRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDKF-SKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRT--SLLDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAE 267          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A438BMD3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BMD3_VITVI)

HSP 1 Score: 127 bits (319), Expect = 1.290e-32
Identity = 72/178 (40.45%), Postives = 107/178 (60.11%), Query Frame = 0
Query:    1 MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAV--GEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            +R+R  G  KL Q  Y+  +  +FN+    +  A +  G+K  SK   PQ + E EEM+  PY   VG+LM+A   TRPD+A     LG++  NPG  HW+AAK+ L+YL+ TKD+ +TY+ T  S   +    DADFA C D ++S +G   ++ GGA+SW S  Q +TA+++ E+E
Sbjct:   23 LRDRANGVFKLSQRAYIEKILKRFNMHNCKSTKAPIVKGDKF-SKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRT--SLLDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAE 197          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.920e-32
Identity = 77/177 (43.50%), Postives = 103/177 (58.19%), Query Frame = 0
Query:    2 RNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAVGEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKV--DADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            R+ D GTLK+ Q  Y   +  +F VE    +   VG K    D       + EE+   P+RE +G+LMW AT TRPD+ANA   + ++  +P  +HWRA    L Y+ RT D GIT+    GS A LS +V  DAD+A+    RRSVSGG V+ GGG ISWFSR QK    +++E+E
Sbjct:   64 RDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMKLSEFD-------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRR--GSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAE 231          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A438JRX8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JRX8_VITVI)

HSP 1 Score: 129 bits (325), Expect = 4.120e-32
Identity = 73/178 (41.01%), Postives = 109/178 (61.24%), Query Frame = 0
Query:    1 MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAV--GEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            +R+R  G LKL Q  Y+  +  +FN+    +  A++  G+K  SK   PQ + E EEM+  PY   VG+LM+A   TRPD+A     LG++  NPG  HW+AAK+ L+YL+ TKD+ +TY+ T  S   +    DADFA C D ++S +G   ++ GGA+SW S  Q +TA+++ E+E
Sbjct:   23 LRDRANGVLKLSQRAYIERILKRFNMHNCKSTKASIVKGDKF-SKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRT--SLLDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAE 197          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 9.410e-32
Identity = 77/177 (43.50%), Postives = 104/177 (58.76%), Query Frame = 0
Query:    2 RNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAVGEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKV--DADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            R+ D GTLK+ Q  Y   +  +F VE    +   VG K    D       + EE+   P+RE +G+LMW AT TRPD+ANA   + ++  +P  +HWRA    L Y+ RT D+GIT+    GS A LS +V  DAD+A+    RRSVSGG V+ GGG ISWFSR QK    +++E+E
Sbjct:  165 RDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFD-------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRR--GSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAE 332          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A5BJG5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Vitis vinifera TaxID=29760 RepID=A5BJG5_VITVI)

HSP 1 Score: 125 bits (313), Expect = 2.650e-31
Identity = 72/178 (40.45%), Postives = 107/178 (60.11%), Query Frame = 0
Query:    1 MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAV--GEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            +R+R  G LKL Q  Y+  +  +FN+    +  A +  G+K  SK   PQ + E EEM+  PY   VG+LM+A   T PD+A     LG++  NPG  HW+AAK+ L+YL+ TKD+ +TY+ T  S   +    DADFA C D ++S +G   ++ GGA+SW S  Q +TA+++ E+E
Sbjct:   73 LRDRANGVLKLSQRVYIERILKRFNMHNCKSTKAPIVKGDKF-SKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTCPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRT--SLLDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAE 247          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A438BPS5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BPS5_VITVI)

HSP 1 Score: 129 bits (323), Expect = 2.680e-31
Identity = 73/178 (41.01%), Postives = 108/178 (60.67%), Query Frame = 0
Query:    1 MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAV--GEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            +R+R  G LKL Q  Y+  +  +FN+    +  A +  G+K  SK   PQ + E EEM+  PY   VG+LM+A   TRPD+A     LG++  NPG  HW+AAK+ L+YL+ TKD+ +TY+ T  S   +    DADFA C D ++S +G   ++ GGA+SW S  Q +TA+++ E+E
Sbjct:  577 LRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDKF-SKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRT--SLLDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAE 751          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.380e-31
Identity = 77/177 (43.50%), Postives = 104/177 (58.76%), Query Frame = 0
Query:    2 RNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAVGEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKV--DADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            R+ D GTLK+ Q  Y   +  +F VE    +   VG K    D       + EE+   P+RE +G+LMW AT TRPD+ANA   + ++  +P  +HWRA    L Y+ RT D+GIT+    GS A LS +V  DAD+A+    RRSVSGG V+ GGG ISWFSR QK    +++E+E
Sbjct:  339 RDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFD-------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRR--GSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAE 506          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A438BZI3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZI3_VITVI)

HSP 1 Score: 127 bits (320), Expect = 4.970e-31
Identity = 73/178 (41.01%), Postives = 107/178 (60.11%), Query Frame = 0
Query:    1 MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAV--GEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            +R+R  G LKL Q  Y+  +  +FN+       A +  G+K  SK   PQ + E EEM+  PY   VG+LM+A   TRPD+A     LG++  NPG  HW+AAK+ L+YL+ TKD+ +TY+ T  S   +    DADFA C D ++S +G   ++ GGA+SW S  Q +TA+++ E+E
Sbjct:  360 LRDRANGVLKLSQRAYIEKILKRFNMHNCKFTKAPIVKGDKF-SKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRT--SLLDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAE 534          
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 5.310e-31
Identity = 78/177 (44.07%), Postives = 102/177 (57.63%), Query Frame = 0
Query:    2 RNRDVGTLKLDQHRYVRTVASKFNVEKTSTL-TAAVGEKPPSKDDAPQTEAETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRAAKRALQYLRRTKDVGITYEGTLGSCAK-LSAKVDADFATCPDTRRSVSGGAVILGGGAISWFSRGQKITAAASSESE 176
            RNR   TL L Q RY  TV  +F++  ++ + T     K  SK     T  +   M   PYR  VG+LM+ A  TRPD+A   HQL +F DNPGP HWRAAKRAL+YL  T+  G+   G+       LSA VD D+A CPDTRR VSG  ++  G  ISW ++ Q I   +++E+E
Sbjct: 1420 RNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDVSFMASKPYRSLVGSLMYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDEDYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAE 1596          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig863.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438HF44_VITVI2.590e-3341.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BMD3_VITVI1.290e-3240.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KR24_9PHAE2.920e-3243.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A438JRX8_VITVI4.120e-3241.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JLN0_9PHAE9.410e-3243.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BJG5_VITVI2.650e-3140.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438BPS5_VITVI2.680e-3141.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KQB8_9PHAE4.380e-3143.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438BZI3_VITVI4.970e-3141.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0X7I6_9STRA5.310e-3144.07Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..54
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 42..150
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 42..150
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 132..176
e-value: 1.80778E-18
score: 75.1973

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig863contigA-nodosum_M_contig863:161468..161998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig863.18.1mRNA_A-nodosum_M_contig863.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig863 161462..162274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig863.18.1 ID=prot_A-nodosum_M_contig863.18.1|Name=mRNA_A-nodosum_M_contig863.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=177bp
MRNRDVGTLKLDQHRYVRTVASKFNVEKTSTLTAAVGEKPPSKDDAPQTE
AETEEMRITPYREAVGALMWAATMTRPDVANAAHQLGKFNDNPGPVHWRA
AKRALQYLRRTKDVGITYEGTLGSCAKLSAKVDADFATCPDTRRSVSGGA
VILGGGAISWFSRGQKITAAASSESE*
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