prot_A-nodosum_M_contig847.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig847.18.1
Unique Nameprot_A-nodosum_M_contig847.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length117
Homology
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 4.040e-58
Identity = 92/115 (80.00%), Postives = 107/115 (93.04%), Query Frame = 0
Query:    1 MATPVGTGPIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHESMESWKQEEKL 115
            MATPVGTGPIVQDVAPKGG+P +QI+R+LP  RGPRG+V+LGLVT+TMAVGYY+LGQANKARRAE+HEKRLARIALMPMLQAEEDRK VL KRF  QLQ+G+HES+ +WK+EE+L
Sbjct:    1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 115          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A061QUA6_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUA6_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 4.360e-17
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHESMESW 109
            P++QD  P GG+P I+IARR+P + GP GA I G+  L M+ G+Y +GQ N  RRA+K E+   R AL+P LQAEEDR+ +  K+   + +  + + ++ W
Sbjct:   19 PVLQDGPPPGGFPSIRIARRIPNT-GPSGAAIFGVGALVMSYGFYLVGQTNIQRRADKAEREHVRRALVPFLQAEEDRRYLKAKKQLLEKEASIMKDVDGW 118          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A087SFV8_AUXPR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFV8_AUXPR)

HSP 1 Score: 79.0 bits (193), Expect = 2.400e-16
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHESMESWKQEEKL 115
            PIVQD  P GG+P ++ ARRLP S GP G  + G+    MA G+Y++GQ N  RR EK EK  +R AL+P LQAEEDR+ V      Q+ Q+ + ++   +K EE +
Sbjct:   19 PIVQDGPPPGGFPAVRYARRLPNS-GPAGFTLFGVGAAVMAYGFYQVGQGNIKRRDEKREKLDSRRALVPFLQAEEDRRWVAANEEFQKKQKEIMKNHPEYKAEESV 124          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A5J4XG14_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG14_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.380e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIV 89
            P++QD  P GG+P ++ ARR+P S GP G  +  +    MA G+ ++GQ N  RRA K EK+ AR A+MP+LQAEEDR+ V
Sbjct:   19 PVLQDGPPPGGFPSVRYARRIP-STGPAGFTLFAVTASIMAYGFIKVGQTNHERRAAKAEKKAARFAIMPILQAEEDRRYV 98          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A7S3CKE5_9SPIT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKE5_9SPIT)

HSP 1 Score: 76.3 bits (186), Expect = 2.820e-15
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   10 IVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKR 93
            ++QD  P GG+P ++IARR+P + GP GA + G+  L ++ G+Y +GQ N  +RA++ EK   R AL+P+LQAEEDR+ V  K+
Sbjct:   22 LLQDGPPAGGFPSVRIARRIPNT-GPSGAAVFGVGALVISYGFYIVGQTNIQKRADRAEKEAVRRALVPVLQAEEDRRFVAAKK 104          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A2P6U3A2_CHLSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3A2_CHLSO)

HSP 1 Score: 75.9 bits (185), Expect = 3.800e-15
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIV 89
            PIVQD  P GG+P I+ ARR+P S GP G  +  +    MA G+Y++GQ+N+ RR EK E   AR AL+P LQAEEDR+ V
Sbjct:   19 PIVQDGPPPGGFPAIRYARRVP-STGPSGFTLFAVGAAVMAYGFYKVGQSNRQRRGEKAEHFGARAALVPFLQAEEDRRWV 98          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A2P6VLY9_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLY9_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 2.880e-14
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIV 89
            P+VQD  P GG+P  + ARR+P S GP G  +       MA G+Y++GQ+N+ RRA+K     AR AL+P LQAEEDR+ V
Sbjct:   19 PVVQDGPPPGGFPSFRYARRVP-STGPSGITLFAAGAAVMAFGFYKVGQSNRERRAQKAANLAARAALVPFLQAEEDRRWV 98          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: F0YB35_AURAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB35_AURAN)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-13
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   10 IVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHESMESWK 110
            +VQD+ P GGYP + I ++   +RGP G +I     LT+A G+YR+GQ N  R A K EKR AR+A++P LQAEED + V  K  Q   +  + + ++ WK
Sbjct:   18 VVQDMPPAGGYPDV-IFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAKLNQDADEAEIMKGVKDWK 117          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A388KNK5_CHABU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNK5_CHABU)

HSP 1 Score: 70.5 bits (171), Expect = 4.850e-13
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEED 85
            P++QD  P GG+P I+ AR++P + GP G V+  +    ++ G Y++GQ N  RRA K EK  AR+A++P++QAEED
Sbjct:   19 PVLQDGPPPGGFPAIRYARKIPNT-GPSGVVVFSIAAAVISYGMYQVGQGNLHRRALKKEKMEARMAILPLIQAEED 94          
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Match: A0A0D2WN18_CAPO3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WN18_CAPO3)

HSP 1 Score: 68.6 bits (166), Expect = 1.970e-12
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 0
Query:    9 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHESMESWKQEEKL 115
            P  QD+ P+GG+  +   R+    RG  GA +  + T+TM  G + +GQ NK RR  + E+ +AR  L+PMLQAEEDR+ VL KR  +  +  + +++  WK  EK+
Sbjct:    5 PYKQDMPPQGGFADVPF-RKPKAVRGLSGAALFAIGTVTMFGGLFIVGQGNKTRRYWREEQVIARRNLVPMLQAEEDRRFVLAKRAAEAKEAELMKNVRGWKMHEKI 110          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS9_ECTSI4.040e-5880.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A061QUA6_9CHLO4.360e-1743.56NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A087SFV8_AUXPR2.400e-1645.79NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A5J4XG14_9CHLO1.380e-1549.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3CKE5_9SPIT2.820e-1546.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2P6U3A2_CHLSO3.800e-1553.09NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2P6VLY9_9CHLO2.880e-1449.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
F0YB35_AURAN1.610e-1343.56NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A388KNK5_CHABU4.850e-1345.45NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A0D2WN18_CAPO31.970e-1239.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 10..110
e-value: 1.3E-21
score: 76.9
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 8..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig847contigA-nodosum_M_contig847:235866..239189 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig847.18.1mRNA_A-nodosum_M_contig847.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig847 235519..240031 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig847.18.1 ID=prot_A-nodosum_M_contig847.18.1|Name=mRNA_A-nodosum_M_contig847.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MATPVGTGPIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAV
GYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQ
GMHESMESWKQEEKLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19