prot_A-nodosum_M_contig847.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig847.12.1
Unique Nameprot_A-nodosum_M_contig847.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length197
Homology
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 6.570e-122
Identity = 182/196 (92.86%), Postives = 184/196 (93.88%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVQLGGASNTTSSSSKCC 196
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDK VD+AAAKE+AESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTV LGG         KCC
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVNLGGXXXXXXXXXKCC 202          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 329 bits (844), Expect = 5.220e-113
Identity = 175/200 (87.50%), Postives = 181/200 (90.50%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNS----TVQLGGASNTTSSSSKCC 196
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESF HVNDWLSEVNRYASEGTSKLLIGNKSDR DKAV T  AK FA+SLGIPFLETSAK+ASNVEEAFLTMASELIRTREARAA Q ++S    TVQL   ++   SS KCC
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA)

HSP 1 Score: 305 bits (781), Expect = 2.360e-103
Identity = 160/199 (80.40%), Postives = 169/199 (84.92%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDRE-DKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAT--QVDNSTVQLGGASNTTSSSSKCC 196
            D+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQ+SFDHVNDWL EVNRYASEGT KLL+GNKSDR  DK V    AKEFA+ +GIPFLETSAK+A+NVEEAFLTMASELI+ R AR  T    D   VQLGG        S CC
Sbjct:   12 DYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTTDKVVTAEQAKEFADDIGIPFLETSAKSAANVEEAFLTMASELIKQRIARGGTAEDADGDNVQLGGGKRAKEMMSNCC 210          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: W7TI50_9STRA (Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI50_9STRA)

HSP 1 Score: 299 bits (766), Expect = 4.710e-101
Identity = 155/194 (79.90%), Postives = 167/194 (86.08%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVQLGGASNTTSSSSK 194
            D LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF+H+ DWL+EVNRYASEGT KLL+GNKSDR DK V T  AK+FA+ LGIPFLETSAKNASNVEEAFLTMA ELIR REA+ A          G + +T S SSK
Sbjct:    7 DFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSK 200          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: F0YFR6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFR6_AURAN)

HSP 1 Score: 298 bits (764), Expect = 7.460e-101
Identity = 156/199 (78.39%), Postives = 171/199 (85.93%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDN---STVQLGGASNTTSSSSKCC 196
            DHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESFDHV+DWL+EVNRYA+EGT KLL+GNK D EDK V T AAKE+A+ LGIPFLETSAKNA+NVEEAFLTMA ELIR REA  + +      S ++L G S+ T    KCC
Sbjct:    7 DHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREASQSAKPGAGGASGLKLSGGSSRTK---KCC 202          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A7S2Y0T5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T5_9STRA)

HSP 1 Score: 294 bits (752), Expect = 4.360e-99
Identity = 148/196 (75.51%), Postives = 173/196 (88.27%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVQLGGASNTTSSSSKCC 196
            D+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D+KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYD+T +E+FDHVNDWL+EV+RYA E T KLL+GNKSDR D+AV+T  AKE+A+ LGIPF+ETSAK+A+NVE+AFLTMA +LI  R+A+   +  N  V LGG S++TS   +CC
Sbjct:    7 DYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKLDQKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDITHKEAFDHVNDWLAEVDRYAGESTCKLLVGNKSDRTDRAVETQTAKEYADELGIPFIETSAKSAANVEQAFLTMAKQLIELRQAKGVEE-SNQNVSLGGKSSSTSLP-QCC 200          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A7S1GR15_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GR15_CYCTE)

HSP 1 Score: 294 bits (752), Expect = 6.370e-99
Identity = 153/185 (82.70%), Postives = 161/185 (87.03%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDR-EDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVQLGG 184
            D+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESFDHVNDWL EVNRYA+EGT KLL+GNKSDR  DK V    AKEFA+ LGI FLETSAK+A NVEEAFLTMA ELIR R+AR  T    S + L G
Sbjct:   16 DYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRVADKVVTEEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIRQRDARGITSDGKSGIDLSG 200          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A7S1XNK2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK2_9STRA)

HSP 1 Score: 293 bits (750), Expect = 7.160e-99
Identity = 152/197 (77.16%), Postives = 170/197 (86.29%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDR-EDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVQLGGASNTTSSSSKCC 196
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTV+IDKK VKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+QESF+ +  WL+EVNRYA+EGT KLL+GNKSDR ED+ V TA  +E A+SLGIPFLETSAKNA+NVEEAFLTMASELI +RE R     D++ +QLG +      + KCC
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVRIDKKVVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFNSITAWLNEVNRYATEGTCKLLVGNKSDRDEDRIVTTAQGEEMAKSLGIPFLETSAKNAANVEEAFLTMASELITSREERGGATGDDANLQLGSSGG---GNGKCC 194          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A7S3JUQ1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUQ1_9STRA)

HSP 1 Score: 292 bits (747), Expect = 3.200e-98
Identity = 154/203 (75.86%), Postives = 174/203 (85.71%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDR-EDKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARA------ATQVDNSTVQLGGASNTTSSSSKCC 196
            DHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK++ KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHV +WL+EVNRYA+EGT KLL+GNKSD   +K V T  AKE+A+SLGIPFLETSAKNA+NVEEAFLTMA+ELI+ RE+++       T    S ++L G   T SS+ KCC
Sbjct:    8 DHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVEGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVAEWLAEVNRYANEGTCKLLVGNKSDMGTEKCVSTETAKEYADSLGIPFLETSAKNATNVEEAFLTMAAELIKLRESKSNASGKGGTSTTASGLKLSG---TRSSNKKCC 207          
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA)

HSP 1 Score: 291 bits (746), Expect = 5.040e-98
Identity = 151/185 (81.62%), Postives = 160/185 (86.49%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDRE-DKAVDTAAAKEFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVQLGG 184
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS++SFDHVNDW+ EVNRYASEGT KLL+GNKSDR  DK V    AKEFA+ LGI FLETSAK+A NVEEAFLTMA ELI+ R  R +   D   V L G
Sbjct:   15 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADKIVKEEEAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQRAERGSNGDDKQKVSLNG 199          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G118_ECTSI6.570e-12292.86Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z965_9STRA5.220e-11387.50Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A7S3VAP6_9STRA2.360e-10380.40Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7TI50_9STRA4.710e-10179.90Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
F0YFR6_AURAN7.460e-10178.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2Y0T5_9STRA4.360e-9975.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1GR15_CYCTE6.370e-9982.70Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S1XNK2_9STRA7.160e-9977.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3JUQ1_9STRA3.200e-9875.86Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2N4U8_9STRA5.040e-9881.62Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 27..43
score: 38.7
coord: 4..25
score: 58.6
coord: 45..67
score: 56.57
coord: 141..163
score: 44.71
coord: 107..120
score: 40.09
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 1..166
e-value: 7.0E-33
score: 125.2
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 9..195
e-value: 2.0E-5
score: 27.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 4..166
e-value: 6.1E-98
score: 341.4
NoneNo IPR availablePIRSRPIRSR006809-2PIRSR006809-2coord: 8..154
e-value: 0.0049
score: 13.6
NoneNo IPR availablePIRSRPIRSR006809-1PIRSR006809-1coord: 8..154
e-value: 0.0049
score: 13.6
NoneNo IPR availablePANTHERPTHR47977:SF6RAS-RELATED PROTEIN RABD2A-LIKEcoord: 1..161
NoneNo IPR availablePANTHERPTHR47977LD21953P-RELATEDcoord: 1..161
NoneNo IPR availablePROSITEPS51419RABcoord: 1..196
score: 37.040295
NoneNo IPR availablePROSITEPS51420RHOcoord: 1..169
score: 10.561192
NoneNo IPR availableCDDcd01869Rab1_Ypt1coord: 2..165
e-value: 2.85847E-112
score: 315.422
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 6..167
e-value: 4.1E-15
score: 66.2
IPR001806Small GTPasePFAMPF00071Rascoord: 5..163
e-value: 1.3E-62
score: 210.1
IPR001806Small GTPasePROSITEPS51421RAScoord: 1..196
score: 19.790831
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 4..158
e-value: 1.6E-35
score: 120.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..196
e-value: 1.3E-71
score: 242.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig847contigA-nodosum_M_contig847:197408..204298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig847.12.1mRNA_A-nodosum_M_contig847.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig847 197408..204298 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig847.12.1 ID=prot_A-nodosum_M_contig847.12.1|Name=mRNA_A-nodosum_M_contig847.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=197bp
DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKK
TVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSE
VNRYASEGTSKLLIGNKSDREDKAVDTAAAKEFAESLGIPFLETSAKNAS
NVEEAFLTMASELIRTREARAATQVDNSTVQLGGASNTTSSSSKCC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase