prot_A-nodosum_M_contig845.10.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig845.10.1
Unique Nameprot_A-nodosum_M_contig845.10.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length54
Homology
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6H5KEX7_9PHAE (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.130e-26
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHSGGKGISK+SLPYKRSPPSWLKISAQEVT+HVCKLAKKGLTPSQ
Sbjct:   38 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQ 86          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6H5K9A0_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.110e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHSGGKGISK+SL  KRSPPSWLKISAQEVT+HVCKLAKK LTPSQ
Sbjct:    1 MGRMHSGGKGISKSSLLCKRSPPSWLKISAQEVTEHVCKLAKKRLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6H5KYF2_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.130e-22
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHSGGKGISK+SLPY+R  P WLK+SAQEVT+HVCKLAKKGLTPSQ
Sbjct:   21 MGRMHSGGKGISKSSLPYRRRVPLWLKVSAQEVTEHVCKLAKKGLTPSQ 69          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A2P4XIV9_9STRA (40S ribosomal protein S13 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIV9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.830e-22
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHS GKG+SK++ PYKRSPPSWLK+SA++V DH+CK AKKGLTPSQ
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A7S4K193_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K193_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.860e-22
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGR+H+ GKGISK SLPYKRSPPSW KISA +V DHVCKLAKKGLTPSQ
Sbjct:    1 MGRLHAPGKGISKRSLPYKRSPPSWSKISAADVEDHVCKLAKKGLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: M4BKL8_HYAAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKL8_HYAAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.100e-22
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHS GKG+SK++ PYKRSPPSWLK+SA++V DH+CK AKKGLTPSQ
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A662XPE7_9STRA (Ribosomal_S13_N domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPE7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.840e-22
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHS GKG+SK++ PYKRSPPSWLK+S+++V DH+CK AKKGLTPSQ
Sbjct:    1 MGRMHSRGKGMSKSARPYKRSPPSWLKVSSEDVEDHICKFAKKGLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A2R6X0T8_MARPO (Ribosomal_S13_N domain-containing protein n=4 Tax=Streptophyta TaxID=35493 RepID=A0A2R6X0T8_MARPO)

HSP 1 Score: 90.1 bits (222), Expect = 1.110e-21
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHS GKG+S ++LPYKR+PPSWLKI+ QEV DH+CKLAKKGLTPSQ
Sbjct:    1 MGRMHSRGKGMSSSALPYKRNPPSWLKITTQEVDDHICKLAKKGLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A7S0SUB1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUB1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.110e-21
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHSGGKGISK+SLPYKRSPPSWLKISA +V D V KLAKKGLTPSQ
Sbjct:    1 MGRMHSGGKGISKSSLPYKRSPPSWLKISAAQVEDLVIKLAKKGLTPSQ 49          
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6A4Z540_9STRA (Ribosomal_S13_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z540_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-21
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 49
            MGRMHSGGKGISK++ PYKR+PPSWLK+++++V DHVCK AKKGLTPSQ
Sbjct:    1 MGRMHSGGKGISKSARPYKRTPPSWLKVTSEDVEDHVCKFAKKGLTPSQ 49          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX7_9PHAE4.130e-2695.92Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A6H5K9A0_9PHAE1.110e-2289.80Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A6H5KYF2_9PHAE1.130e-2285.71Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A2P4XIV9_9STRA4.830e-2277.5540S ribosomal protein S13 n=1 Tax=Phytophthora pal... [more]
A0A7S4K193_9STRA4.860e-2283.67Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
M4BKL8_HYAAE5.100e-2277.55Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A662XPE7_9STRA6.840e-2275.51Ribosomal_S13_N domain-containing protein (Fragmen... [more]
A0A2R6X0T8_MARPO1.110e-2179.59Ribosomal_S13_N domain-containing protein n=4 Tax=... [more]
A0A7S0SUB1_9STRA1.110e-2187.76Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6A4Z540_9STRA1.110e-2177.55Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..49
e-value: 4.6E-18
score: 76.0
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..49
e-value: 2.7E-21
score: 75.4
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..50
NoneNo IPR availablePANTHERPTHR11885:SF23RIBOSOMAL PROTEIN S15-RELATEDcoord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig845contigA-nodosum_M_contig845:133014..133175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig845.10.1mRNA_A-nodosum_M_contig845.10.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig845 133014..133175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig845.10.1 ID=prot_A-nodosum_M_contig845.10.1|Name=mRNA_A-nodosum_M_contig845.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=54bp
MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQA
SRS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012606Ribosomal_S13/S15_N
IPR023029Ribosomal_S15P