mRNA_A-nodosum_M_contig845.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig845.10.1
Unique NamemRNA_A-nodosum_M_contig845.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6H5KEX7_9PHAE (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.130e-26
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHSGGKGISK+SLPYKRSPPSWLKISAQEVT+HVCKLAKKGLTPSQ
Sbjct:   38 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQ 86
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BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6H5K9A0_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.110e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHSGGKGISK+SL  KRSPPSWLKISAQEVT+HVCKLAKK LTPSQ
Sbjct:    1 MGRMHSGGKGISKSSLLCKRSPPSWLKISAQEVTEHVCKLAKKRLTPSQ 49
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BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6H5KYF2_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.130e-22
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHSGGKGISK+SLPY+R  P WLK+SAQEVT+HVCKLAKKGLTPSQ
Sbjct:   21 MGRMHSGGKGISKSSLPYRRRVPLWLKVSAQEVTEHVCKLAKKGLTPSQ 69
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A2P4XIV9_9STRA (40S ribosomal protein S13 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIV9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.830e-22
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHS GKG+SK++ PYKRSPPSWLK+SA++V DH+CK AKKGLTPSQ
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQ 49
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A7S4K193_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K193_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.860e-22
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGR+H+ GKGISK SLPYKRSPPSW KISA +V DHVCKLAKKGLTPSQ
Sbjct:    1 MGRLHAPGKGISKRSLPYKRSPPSWSKISAADVEDHVCKLAKKGLTPSQ 49
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: M4BKL8_HYAAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKL8_HYAAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.100e-22
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHS GKG+SK++ PYKRSPPSWLK+SA++V DH+CK AKKGLTPSQ
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQ 49
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A662XPE7_9STRA (Ribosomal_S13_N domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPE7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.840e-22
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHS GKG+SK++ PYKRSPPSWLK+S+++V DH+CK AKKGLTPSQ
Sbjct:    1 MGRMHSRGKGMSKSARPYKRSPPSWLKVSSEDVEDHICKFAKKGLTPSQ 49
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A2R6X0T8_MARPO (Ribosomal_S13_N domain-containing protein n=4 Tax=Streptophyta TaxID=35493 RepID=A0A2R6X0T8_MARPO)

HSP 1 Score: 90.1 bits (222), Expect = 1.110e-21
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHS GKG+S ++LPYKR+PPSWLKI+ QEV DH+CKLAKKGLTPSQ
Sbjct:    1 MGRMHSRGKGMSSSALPYKRNPPSWLKITTQEVDDHICKLAKKGLTPSQ 49
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A7S0SUB1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUB1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.110e-21
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHSGGKGISK+SLPYKRSPPSWLKISA +V D V KLAKKGLTPSQ
Sbjct:    1 MGRMHSGGKGISKSSLPYKRSPPSWLKISAAQVEDLVIKLAKKGLTPSQ 49
[Close]
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Match: A0A6A4Z540_9STRA (Ribosomal_S13_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z540_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-21
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQ 147
            MGRMHSGGKGISK++ PYKR+PPSWLK+++++V DHVCK AKKGLTPSQ
Sbjct:    1 MGRMHSGGKGISKSARPYKRTPPSWLKVTSEDVEDHVCKFAKKGLTPSQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig845.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX7_9PHAE4.130e-2695.92Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A6H5K9A0_9PHAE1.110e-2289.80Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A6H5KYF2_9PHAE1.130e-2285.71Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A2P4XIV9_9STRA4.830e-2277.5540S ribosomal protein S13 n=1 Tax=Phytophthora pal... [more]
A0A7S4K193_9STRA4.860e-2283.67Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
M4BKL8_HYAAE5.100e-2277.55Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A662XPE7_9STRA6.840e-2275.51Ribosomal_S13_N domain-containing protein (Fragmen... [more]
A0A2R6X0T8_MARPO1.110e-2179.59Ribosomal_S13_N domain-containing protein n=4 Tax=... [more]
A0A7S0SUB1_9STRA1.110e-2187.76Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6A4Z540_9STRA1.110e-2177.55Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig845contigA-nodosum_M_contig845:133014..133175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJH0
Preferred nameRPS13
PFAMsRibosomal_S13_N,Ribosomal_S15
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K02953
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070181,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990932
Exons1
Evalue5.67e-27
EggNOG OGsCOG0184@1|root,KOG0400@2759|Eukaryota
Descriptionsmall ribosomal subunit rRNA binding
Cds size162
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870216.9014409-CDS-A-nodosum_M_contig845:133013..1331751680870216.9014409-CDS-A-nodosum_M_contig845:133013..133175Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig845 133014..133175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig845.10.1prot_A-nodosum_M_contig845.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig845 133014..133175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig845.10.1

>prot_A-nodosum_M_contig845.10.1 ID=prot_A-nodosum_M_contig845.10.1|Name=mRNA_A-nodosum_M_contig845.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=54bp
MGRMHSGGKGISKTSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQA
SRS*
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mRNA from alignment at A-nodosum_M_contig845:133014..133175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig845.10.1 ID=mRNA_A-nodosum_M_contig845.10.1|Name=mRNA_A-nodosum_M_contig845.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at A-nodosum_M_contig845:133014..133175+ (Ascophyllum nodosum dioecious)
ATGGGGCGCATGCACAGCGGTGGTAAGGGTATCTCAAAGACCTCCCTGCC
TTATAAGCGCAGCCCTCCGTCGTGGCTGAAGATCTCCGCGCAGGAGGTCA
CCGACCACGTGTGCAAGTTGGCCAAGAAGGGCCTTACTCCATCCCAGGCG
AGTCGTTCGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig845:133014..133175+

>mRNA_A-nodosum_M_contig845.10.1 ID=mRNA_A-nodosum_M_contig845.10.1|Name=mRNA_A-nodosum_M_contig845.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=162bp|location=Sequence derived from alignment at A-nodosum_M_contig845:133014..133175+ (Ascophyllum nodosum dioecious)
ATGGGGCGCATGCACAGCGGTGGTAAGGGTATCTCAAAGACCTCCCTGCC
TTATAAGCGCAGCCCTCCGTCGTGGCTGAAGATCTCCGCGCAGGAGGTCA
CCGACCACGTGTGCAAGTTGGCCAAGAAGGGCCTTACTCCATCCCAGGCG
AGTCGTTCGTGA
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