prot_A-nodosum_M_contig8440.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8440.2.1
Unique Nameprot_A-nodosum_M_contig8440.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length92
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8440.2.1 vs. uniprot
Match: D8LHE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.690e-24
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:   13 IGKPNLGIVSANRKTEICRNWQRGCCIYGGMVLYYRECVCLRYRCGLREHVEHTGRIPNASKFRCYPCLTWVATGACPYF 92
            +GKP+L +VS NRKTEICRNWQ+G C+       +        R  L + +E+TGRIPNASKFRCYPCLTW+ TGACPYF
Sbjct:    1 MGKPSLDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSL-DQMEYTGRIPNASKFRCYPCLTWITTGACPYF 79
[Close]
BLAST of mRNA_A-nodosum_M_contig8440.2.1 vs. uniprot
Match: A0A836CEW5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.590e-18
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0 
Query:   20 IVSANRKTEICRNWQRGCCIYGGMVLYYRECVCLRYRCGLREHVEHTGRIPNASKFRCYPCL--TWVATGACPY 91
            ++ ANRKTE+CRNWQ G C+YGG   +      L  +      +E  GRIPNA++FR  PC+  TWVATG+CPY
Sbjct:    4 VIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQ--TLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPY 75
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8440.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE0_ECTSI5.690e-2458.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEW5_9STRA3.590e-1850.00C3H1-type domain-containing protein n=1 Tax=Tribon... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 24..41
score: 8.671398

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8440contigA-nodosum_M_contig8440:23067..25279 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8440.2.1mRNA_A-nodosum_M_contig8440.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8440 23067..25279 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8440.2.1 ID=prot_A-nodosum_M_contig8440.2.1|Name=mRNA_A-nodosum_M_contig8440.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
GRKGNQPRFSPRIGKPNLGIVSANRKTEICRNWQRGCCIYGGMVLYYREC
VCLRYRCGLREHVEHTGRIPNASKFRCYPCLTWVATGACPYF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH