mRNA_A-nodosum_M_contig8440.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8440.2.1
Unique NamemRNA_A-nodosum_M_contig8440.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8440.2.1 vs. uniprot
Match: D8LHE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.690e-24
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   37 IGKPNLGIVSANRKTEICRNWQRGCCIYGGMVLYYRECVCLRYRCGLREHVEHTGRIPNASKFRCYPCLTWVATGACPYF 276
            +GKP+L +VS NRKTEICRNWQ+G C+       +        R  L + +E+TGRIPNASKFRCYPCLTW+ TGACPYF
Sbjct:    1 MGKPSLDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSL-DQMEYTGRIPNASKFRCYPCLTWITTGACPYF 79
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BLAST of mRNA_A-nodosum_M_contig8440.2.1 vs. uniprot
Match: A0A836CEW5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.590e-18
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   58 IVSANRKTEICRNWQRGCCIYGGMVLYYRECVCLRYRCGLREHVEHTGRIPNASKFRCYPCL--TWVATGACPY 273
            ++ ANRKTE+CRNWQ G C+YGG   +      L  +      +E  GRIPNA++FR  PC+  TWVATG+CPY
Sbjct:    4 VIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQ--TLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPY 75
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8440.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE0_ECTSI5.690e-2458.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEW5_9STRA3.590e-1850.00C3H1-type domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8440contigA-nodosum_M_contig8440:23067..25279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHE0
PFAMszf-CCCH
Model size278
Max annot lvl2759|Eukaryota
KEGG koko:K06236,ko:K18753
KEGG Pathwayko04151,ko04218,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04218,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005938,GO:0044424,GO:0044444,GO:0044464,GO:0071944,GO:0099568
Exons4
Evalue9.32e-25
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-13_000470.1
Description3'-UTR-mediated mRNA destabilization
Cds size276
COG categoryK
BRITEko00000,ko00001,ko00536,ko03019,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870214.5898366-CDS-A-nodosum_M_contig8440:23066..231441680870214.5898366-CDS-A-nodosum_M_contig8440:23066..23144Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8440 23067..23144 +
1680870214.6101243-CDS-A-nodosum_M_contig8440:23543..236531680870214.6101243-CDS-A-nodosum_M_contig8440:23543..23653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8440 23544..23653 +
1680870214.6224601-CDS-A-nodosum_M_contig8440:24803..248581680870214.6224601-CDS-A-nodosum_M_contig8440:24803..24858Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8440 24804..24858 +
1680870214.7859092-CDS-A-nodosum_M_contig8440:25246..252791680870214.7859092-CDS-A-nodosum_M_contig8440:25246..25279Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8440 25247..25279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8440.2.1prot_A-nodosum_M_contig8440.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8440 23067..25279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8440.2.1

>prot_A-nodosum_M_contig8440.2.1 ID=prot_A-nodosum_M_contig8440.2.1|Name=mRNA_A-nodosum_M_contig8440.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
GRKGNQPRFSPRIGKPNLGIVSANRKTEICRNWQRGCCIYGGMVLYYREC
VCLRYRCGLREHVEHTGRIPNASKFRCYPCLTWVATGACPYF
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mRNA from alignment at A-nodosum_M_contig8440:23067..25279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8440.2.1 ID=mRNA_A-nodosum_M_contig8440.2.1|Name=mRNA_A-nodosum_M_contig8440.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2213bp|location=Sequence derived from alignment at A-nodosum_M_contig8440:23067..25279+ (Ascophyllum nodosum dioecious)
GGCCGCAAGGGTAATCAGCCCCGATTCTCTCCCCGGATCGGCAAGCCCAA
CTTGGGCATCGTATCCGCAAACAGGAAGGTGAAGTCAGATCAAACTCAGA
GAAAATTCTATCAAGGACAACATGTCTTCCAAAGGTCGGTTGGTATGGGG
ATATTATCGACTGGTTTCTTCTTCTCGGCGTGCAAAGTGATGTAGCCACC
CAGCCGCCCCAAGAGCTCATCGCGCCGTAGCAAGTTGTGGCAGTTGCTGC
AAGCTTGTTTGTTTAAGTATCGCCAGGGCTGTCAACGTAGATATTGGCGA
AGATTTATTATGCTCAAAAGCTGTGACTTCAAAGACCATGGCTTCAAGGG
CCTTGCATTCTCCATCGTGCGACAACGCGCGTCCGGGGACTTAAAACCTA
CCACTCCGCCAGGCCCGTCCCGTTACTTTCTTCTGCCCCCGCTGATTTTC
CATTGATCCTCATCTTTTCTCCACCAGACTGAGATTTGCCGCAACTGGCA
ACGTGGCTGCTGCATCTACGGAGGTATGGTATTATATTATCGTGAATGCG
TGTGCTTGCGATACCGTTGCGGCCTTCGCGAACACGTGTGCAAGCTAGAG
GGTCTTACATTGTGTACATCTGGGGCTTAATAAAACCTCTACCATACATT
TCCTTGGCACTTCTTTGTCGCGTCCACTGGCGTAGTTTTATCTTCGTCAG
AAAGAACTTTTAGGATATCGCGCCTCCAAACCTATGTTTTGTTTTATTTG
GGAAAACATCAGCTGAACCACTGATCGCCTTGCAAACAAGTAGCGAGAGT
TTCCTTTCCTCCGCCAACGTTTGCCGTCATCCAGCCGGTTCTTGCCCATC
AGCTTCCCTAAACTTGGCACTACTTATCAAAGTGCGCATCGGTTTCTCCG
TTAACACCAGAGAGAATGTAAAGCCGTCGACGACCAACCAATTGTTTTTC
AGGAAGAAGAAACATGCGCTTGGTAAACGGGAAACTCGTACAATATCCAC
GATGTATGCAGTCTATAGAGCTCTCCGGCTGTGGCCTAAACCAAAACAAT
CACACCAAACAATGGTCGAAATCCACCAAGCTTCCTTTTGGCGCTAGTCC
CGGTCACCTTCGACGTGATGCGGATTGACCGTATCGTCATGGCACAACTC
CGTGTGGAACGTCGGTGCAAAGCTGACTTCCGTCAATGCCTCTCTCGACG
TCTTCAACACCACGAACGCTTCGGTACATATCTTGGTTGATAGCTCCGAA
GTGCGCGTTGCGCACGGTGCGCACGACCTGAAGCATCAGAGTCTCGACGA
GATAAGCTCTCTTCTTTGGGGTGAATGCTGCGGTTCATGCCCGCAACCTG
CTCGCCGCGTGAACGCCACGACTTTCTGAAAAATCCTTGCTTTCCAGCTT
CGGCTCGCGCATTTATGTATGGGGTCGGTCGTAGTTATGAAATGATTATG
GCTTCAGATAGTATGACGTATGTTTAAGTATATTCTACTTTGTAAAGCAA
CCAGCATGGATGACGAGTTCTGAAACTTATTTGTTTTGATCAGCAGGAAG
ATCCACACAAGCAGATAGTTTTTTTCAAAGCCAAGGGCGAAGGAAACGCA
ATCTGGGGGTGGAGGTGTGCTGCCACTACTTGGTCGCAAAACATTAATCC
ACTATGAATCAAATCTGACAGTCTGTTTACCTCCTGGCGGGGTTTCGATC
GCGACCGCATTCTGGGGGCGCACCTCCACCGCGCTAGGGAGCACACGGGG
CGGATTCCAAATGCTTCCAAGTTTCGCTGCTACCCGTGCCTGGTAATTTA
GGGTTCATGCTTGCACTCTGCGTCTGCGAAGCGCGGGTCTATTGGTGGGG
TGTTTGCCTTGAAATGGTCAGGCGAACCCCTGCCCGCAGAACCGGCGACT
TTGAACCGAGGGGCGTGGATCCATTTTTGAGCCGGTTTAATATCCCCCGA
ACTGATGAATCTTGCAAGGGAACTTGCTGGCACCGAGTGGTAAGCTAACA
GGAGGCGTCAAAACAGATTGTTTTCAGATCGCAAGAGACGGGCTGTAGAT
TATGAACATATCATGGTAGGTGAGTTTAGCATTTATATGTTATCCAGTTA
TTATTTGTCTGTACTTTTGCAGACCCTTTTTCCTCTTGCTACACTCTCTA
ACCGTCTGATTTCGTCGGGTGCTCCCGCAGACATGGGTCGCGACGGGAGC
CTGCCCGTACTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8440:23067..25279+

>mRNA_A-nodosum_M_contig8440.2.1 ID=mRNA_A-nodosum_M_contig8440.2.1|Name=mRNA_A-nodosum_M_contig8440.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig8440:23067..25279+ (Ascophyllum nodosum dioecious)
GGCCGCAAGGGTAATCAGCCCCGATTCTCTCCCCGGATCGGCAAGCCCAA
CTTGGGCATCGTATCCGCAAACAGGAAGACTGAGATTTGCCGCAACTGGC
AACGTGGCTGCTGCATCTACGGAGGTATGGTATTATATTATCGTGAATGC
GTGTGCTTGCGATACCGTTGCGGCCTTCGCGAACACGTGGAGCACACGGG
GCGGATTCCAAATGCTTCCAAGTTTCGCTGCTACCCGTGCCTGACATGGG
TCGCGACGGGAGCCTGCCCGTACTTC
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