prot_A-nodosum_M_contig844.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig844.2.1
Unique Nameprot_A-nodosum_M_contig844.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length162
Homology
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.380e-44
Identity = 67/161 (41.61%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP K+LGE + + GCA ERD D G L I+QTA+  +MVE++++ +TS +P +PG DLGP+++ E GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:    1 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 158          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.360e-42
Identity = 66/161 (40.99%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  +  +EF     ++FP K+LGE + + GCA ERD + G L I+QTA+  +MVE++++ +TS +P +PG DLGP+++ E GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:    1 MVDEVVVMIIVIYVDDILVAGSDEDFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 158          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.230e-41
Identity = 66/161 (40.99%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP K+LGE + + GCA ERD + G L I+QTA+  +MVE++++ +TS +P +PG DLGP+++ E GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:  144 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 301          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.900e-41
Identity = 70/161 (43.48%), Postives = 110/161 (68.32%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +H+DDI+V+G  + C+E      +RFP+K+LGE + + GCA ERD D G L+I+QTA+  +MV+++++  TS +P SPGVDLGP++D E  G  E+P  R  +GS+MW+S  +RPD+  A+R  +RH+  P+ RHW A+  +  YV  T+
Sbjct:  491 MVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRFDVQWTSRIPASPGVDLGPKRDDEKAG--EWP-VRETIGSMMWVSTFSRPDVLFAVRGVARHAHAPAKRHWDAIQKILGYVQGTR 648          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.080e-41
Identity = 66/161 (40.99%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP K+LGE + + GCA ERD + G L I+QTA+  +MVE++++ +TS +P +PG DLGP+++ E GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:  208 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 365          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.990e-40
Identity = 66/161 (40.99%), Postives = 108/161 (67.08%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M D  V +++ +++DDI+V+G  + C+E      ++FP K+LGE + + GCA ER  + G L I+QTA+  +MV+++   +TS +P SPGVDLGP++D E+GG  E+P  R  +GS+MW+S  +RPD++ A+RA + H+  P+ RHW A+  +  Y+  T+
Sbjct:  102 MADEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGVDLGPKRDDENGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTR 259          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.500e-40
Identity = 67/161 (41.61%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP K+LGE + + GCA ERD D G L I+QTA+  +MVE++++ +TS +P +PG DLGP+++ + GG  E+P  R  VGS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:  512 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGG--EWP-VREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 669          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.730e-40
Identity = 66/161 (40.99%), Postives = 114/161 (70.81%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP +++GE + + GCA ERD + G L+I+QTA+  +MV+++++ +TS +P SPGVDLGP++D E+GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:  651 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 808          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.220e-40
Identity = 66/161 (40.99%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP K+LGE + + GCA ERD D G L I+QTA+  +MVE++++ +TS +P +PG DLGP+++ E GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  ++  T+
Sbjct:  556 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTR 713          
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 4.140e-40
Identity = 67/161 (41.61%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK 161
            M+D  V +++ +++DDI+V+G  + C+E      ++FP K+L E + + GCA ERD + G L I+QTA+  +MV+++++ +TS +P SPGVDLGP++D E GG  E+P  R  +GS+MW+S  +RPD++ A+RA +RH+  P+ RHW A+  +  Y+  T+
Sbjct:  475 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG--EWP-VREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 632          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH1_9PHAE1.380e-4441.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE1.360e-4240.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE2.230e-4140.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1V1_9PHAE2.900e-4143.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE3.080e-4140.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K616_9PHAE1.990e-4040.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.500e-4041.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE2.730e-4040.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE3.220e-4040.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC10_9PHAE4.140e-4041.61Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig844contigA-nodosum_M_contig844:49040..49525 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig844.2.1mRNA_A-nodosum_M_contig844.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig844 48920..49549 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig844.2.1 ID=prot_A-nodosum_M_contig844.2.1|Name=mRNA_A-nodosum_M_contig844.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=162bp
MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSG
CAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGE
SGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKAL
LLVASYVNATK*
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