mRNA_A-nodosum_M_contig844.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 199 bits (505), Expect = 2.390e-58 Identity = 92/209 (44.02%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 136 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 340
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 199 bits (506), Expect = 4.170e-58 Identity = 92/209 (44.02%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 200 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 404
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE) HSP 1 Score: 188 bits (478), Expect = 3.840e-57 Identity = 88/201 (43.78%), Postives = 139/201 (69.15%), Query Frame = 1
Query: 25 MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
M+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD D G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T +DRR VSG+A +G
Sbjct: 1 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASYANT-DDRRSVSGLATTVG 197
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE) HSP 1 Score: 191 bits (485), Expect = 1.430e-56 Identity = 91/209 (43.54%), Postives = 142/209 (67.94%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+ C+ RKM D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ER + G L I+QTA+ +MV+++ +TS +P SPGVDLGP++D E+GG E+P R +GS+MW+S +RPD++ A+RA + H+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T +DRR VSG+A +G
Sbjct: 94 ADTCVFRKMADEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGVDLGPKRDDENGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASYANT-DDRRSVSGLATTVG 298
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 199 bits (506), Expect = 4.510e-56 Identity = 93/209 (44.50%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+L E + + GCA ERD + G L I+QTA+ +MV+++++ +TS +P SPGVDLGP++D E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 467 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG--EWP-VREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 671
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.380e-55 Identity = 92/209 (44.02%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 913 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 1117
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 197 bits (500), Expect = 2.390e-55 Identity = 91/209 (43.54%), Postives = 144/209 (68.90%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MV ++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 424 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 628
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.480e-55 Identity = 92/209 (44.02%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 1292 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 1496
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.490e-55 Identity = 92/209 (44.02%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 1312 ADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 1516
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.500e-55 Identity = 92/209 (44.02%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 AEPCISRKMMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGCAFERDWDNGILEINQTAFAINMVEQYNISTTSNVPGSPGVDLGPRKDGESGGNEEFPKYRALVGSLMWLSVMTRPDIANALRACSRHSRNPSPRHWKALLLVASYVNATK*IGLRFVRASGLRLSVYADADYAATSNDRRPVSGVAAILG 627
A+PC+ RKM+D V +++ +++DDI+V+G + C+E ++FP K+LGE + + GCA ERD + G L I+QTA+ +MVE++++ +TS +P +PG DLGP+++ E GG E+P R +GS+MW+S +RPD++ A+RA +RH+ P+ RHW A+ + Y+ T+ +G+ + R SGL L+VY DA YA T DRR VSG+A +G
Sbjct: 1455 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVG 1659 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig844.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig844.2.1 >prot_A-nodosum_M_contig844.2.1 ID=prot_A-nodosum_M_contig844.2.1|Name=mRNA_A-nodosum_M_contig844.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=162bp MMDNKVSLMVGVHLDDIIVSGEQDMCDEFFDQPRRRFPAKHLGELKMYSGback to top mRNA from alignment at A-nodosum_M_contig844:48920..49549- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig844.2.1 ID=mRNA_A-nodosum_M_contig844.2.1|Name=mRNA_A-nodosum_M_contig844.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at A-nodosum_M_contig844:48920..49549- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig844:48920..49549- >mRNA_A-nodosum_M_contig844.2.1 ID=mRNA_A-nodosum_M_contig844.2.1|Name=mRNA_A-nodosum_M_contig844.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig844:48920..49549- (Ascophyllum nodosum dioecious)back to top |