prot_A-nodosum_M_contig843.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig843.16.1
Unique Nameprot_A-nodosum_M_contig843.16.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length348
Homology
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BLAST of mRNA_A-nodosum_M_contig843.16.1 vs. uniprot
Match: A0A6H5JFK6_9PHAE (START domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFK6_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 4.200e-123
Identity = 194/346 (56.07%), Postives = 247/346 (71.39%), Query Frame = 0 
Query:    1 MFGVHVCSKPKPPEEKSSLVVCRGQMALPPEVTLNLLQVQFIHAYNNTASLARQMKASDPMSRETKILYQVPCGDDEFIRIVWGSFRAAGVAWARDFCFLQHGCTTTDPDSGERLFAVVAGSIERPEVPDMESLCKRIRSKVKTSGYVFREATDG-TLRASYVVNVNPGGWIPSKIVNVICTNQAMNVSRLGTRLKTTAKALKALEMEPPIQSSSIAWRCIYEVPLSCPAAGASSPWTVSIKFWADNKVWFRVSVVSGGATTNWKPEGMASTVGEGQWELYQAGTAVRAGFTFKPVGAATSGEAKEGTENAGADEVALRQDAKACVLEFKSGGWTKGVSVFYAIDV 345
            +FGV V S+P P +  SSLV+CRGQ+ L  +VT  +++ QF+  +N +  LA+QM+ASDPMSRETKILYQ+PC + E IRI WGSF+AAGVAWARDFCFLQH   +TDP +GERLF VV+GSIERPEVPDME LCKRIRS VKTSG VFRE  DG  +RA+YVVNVNP GWIPSKIVN+ICTNQAMNVSR+  +L  TAKAL AL++E PI   +I WR  +E PL  PA G+++  TVS+KF A +KV FRV V +  ATT+W P   ++ VG G+   Y A T     F  +P  A+ +G A+ G    GA +V L +   + VLE+K  GW  G+ +++ ++V
Sbjct:  122 LFGVKVWSRPNPDDSDSSLVICRGQIPLTQDVTFEMVKTQFVDVFNTSEILAQQMRASDPMSRETKILYQIPCEEGELIRISWGSFKAAGVAWARDFCFLQHAAASTDPATGERLFCVVSGSIERPEVPDMEKLCKRIRSTVKTSGLVFREPKDGGPMRATYVVNVNPNGWIPSKIVNIICTNQAMNVSRVKNKLHETAKALAALKIEAPIFPKAIGWRQTHEFPLRRPAPGSAAS-TVSVKFSATSKVTFRV-VGATAATTDWAPAEASTGVGAGETVTYPADTPTTMTFKLRPEAASGNG-ARRGGGAVGASDVELEEAKSSVVLEWKGAGWFGGLVIYHLVEV 464
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BLAST of mRNA_A-nodosum_M_contig843.16.1 vs. uniprot
Match: A0A7S4DQV3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DQV3_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.420e-6
Identity = 47/163 (28.83%), Postives = 77/163 (47.24%), Query Frame = 0 
Query:   45 YNNTASLARQMKASDPMSRETKILYQVPCGDDEFIRIVWGSFRAAGVAWARDFCFLQHGCTTTDPDSGERLFAVVAGSIERP--EVP-DMESLCKRIRSKVKTSGYVFREATDGTLRASYVVNVNPGGWIPSKIVNVICTNQAMNVSRLGTRLKTTAKALKAL 204
            ++ + + A+ MK +DPM  + K   +   G+  +    + +F       ARDF F +   T  D        +V A   E P  + P D       IR  +  SGY+ +  T  T   +Y+V V+P GW+P+ +V V+  +QA+NV+RL    K   K + +L
Sbjct:   76 WSESKNWAKHMKIADPMFIKGK---KQRIGNGLYQN--YAAFALPAGVTARDFTFHELIVTLNDN-------SVAAICWEEPWKDYPMDTSYFPSYIRGSIIMSGYLAKPLTPNTCEVTYLVQVDPKGWLPAWVVEVVAPDQALNVTRLRDYFKALRKHMPSL 226
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig843.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFK6_9PHAE4.200e-12356.07START domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S4DQV3_9EUKA1.420e-628.83Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023393START-like domain superfamilyGENE3D3.30.530.20coord: 2..203
e-value: 8.5E-22
score: 79.9
IPR002913START domainPFAMPF01852STARTcoord: 77..189
e-value: 6.3E-7
score: 29.0
IPR002913START domainPROSITEPS50848STARTcoord: 95..177
score: 12.057785
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 53..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig843contigA-nodosum_M_contig843:244389..247885 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig843.16.1mRNA_A-nodosum_M_contig843.16.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig843 224097..248056 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig843.16.1 ID=prot_A-nodosum_M_contig843.16.1|Name=mRNA_A-nodosum_M_contig843.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=348bp
MFGVHVCSKPKPPEEKSSLVVCRGQMALPPEVTLNLLQVQFIHAYNNTAS
LARQMKASDPMSRETKILYQVPCGDDEFIRIVWGSFRAAGVAWARDFCFL
QHGCTTTDPDSGERLFAVVAGSIERPEVPDMESLCKRIRSKVKTSGYVFR
EATDGTLRASYVVNVNPGGWIPSKIVNVICTNQAMNVSRLGTRLKTTAKA
LKALEMEPPIQSSSIAWRCIYEVPLSCPAAGASSPWTVSIKFWADNKVWF
RVSVVSGGATTNWKPEGMASTVGEGQWELYQAGTAVRAGFTFKPVGAATS
GEAKEGTENAGADEVALRQDAKACVLEFKSGGWTKGVSVFYAIDVTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom_sf
IPR002913START_lipid-bd_dom