prot_A-nodosum_M_contig840.21.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig840.21.1
Unique Nameprot_A-nodosum_M_contig840.21.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length50
Homology
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            MAR ARVLLSVPAS+AVLERDFSTAGRLITG+RSRL+  YVEM LF
Sbjct:  727 MARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLF 772          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            +ARVARV+   PASAAVLERDFS AGR++T SRS +  +YVEM +F
Sbjct:  621 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMF 666          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.880e-8
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRL-AGEYVEMTLF 46
            +ARVARV+   PASAAVLERDFS AGR++T SR  + +  YVEM LF
Sbjct:    9 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILF 55          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.790e-8
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            +ARVARV++   ASAAVLE DFS AGR++T SRS +  +YVEM LF
Sbjct:  394 LARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILF 439          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.000e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            VARVL S+P+S+A +ERDF TAGR++T  RS LA   V+MT F
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTF 84          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-6
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            VARV+ S+P+S+A +ERDF TAGR++T  R+ LA   V+MT F
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTF 52          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A662XG42_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG42_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.360e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            VARVL S+P+S+A +ERDF TAGR++T  RS LA   V+M  F
Sbjct:  151 VARVLFSMPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATF 193          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            +AR+AR +LS+PA++A  ERDFSTAG +I+  RS+L+ E V+  LF
Sbjct:  184 LARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLF 229          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 4.910e-5
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            +AR ARV+   PASAAVLERDF+ A  ++  SRS    +YVEM LF
Sbjct:  561 LARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLF 606          
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A662XSL6_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSL6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.650e-5
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 46
            VARVL S P+S+A +ERDF TAGR++T  RS LA   V+M  F
Sbjct:  232 VARVLFSKPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATF 274          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE2.850e-1484.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.180e-965.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE3.880e-863.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE6.790e-863.04Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA9.000e-760.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM2.310e-655.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A662XG42_9STRA2.360e-558.14Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI0019661A933.000e-554.35zinc finger BED domain-containing protein DAYSLEEP... [more]
D8LBK4_ECTSI4.910e-556.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A662XSL6_9STRA6.650e-558.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 2..49
e-value: 1.3E-9
score: 37.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig840contigA-nodosum_M_contig840:252497..252646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig840.21.1mRNA_A-nodosum_M_contig840.21.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig840 252479..252646 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig840.21.1 ID=prot_A-nodosum_M_contig840.21.1|Name=mRNA_A-nodosum_M_contig840.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFSQRQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf