mRNA_A-nodosum_M_contig840.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig840.21.1
Unique NamemRNA_A-nodosum_M_contig840.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.200e-18
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 RALYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            +ALYPNMAR ARVLLSVPAS+AVLERDFSTAGRLITG+RSRL+  YVEM LF
Sbjct:  721 QALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLF 772
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.870e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   10 YPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            YP +ARVARV+   PASAAVLERDFS AGR++T SRS +  +YVEM +F
Sbjct:  618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMF 666
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.820e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    7 LYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRL-AGEYVEMTLF 156
            +YP +ARVARV+   PASAAVLERDFS AGR++T SR  + +  YVEM LF
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILF 55
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.510e-9
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   10 YPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            YP +ARVARV++   ASAAVLE DFS AGR++T SRS +  +YVEM LF
Sbjct:  391 YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILF 439
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 54.3 bits (129), Expect = 2.940e-7
Identity = 26/50 (52.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 LYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            ++P++AR+AR +LS+PA++A  ERDFSTAG +I+  RS+L+ E V+  LF
Sbjct:  180 MFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLF 229
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-7
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    7 LYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            LYP +AR ARV+   PASAAVLERDF+ A  ++  SRS    +YVEM LF
Sbjct:  557 LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLF 606
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.150e-6
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   28 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            VARVL S+P+S+A +ERDF TAGR++T  RS LA   V+MT F
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTF 84
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 50.1 bits (118), Expect = 2.950e-6
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   28 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            VARV+ S+P+S+A +ERDF TAGR++T  R+ LA   V+MT F
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTF 52
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: UPI001469E3E5 (zinc finger BED domain-containing protein DAYSLEEPER-like n=2 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469E3E5)

HSP 1 Score: 50.4 bits (119), Expect = 4.080e-6
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   10 YPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLF 156
            +PN+A +AR +LS+PAS+A  ERDFSTAG +++  RS+L    V+  LF
Sbjct:  109 FPNVAHIARSILSIPASSAASERDFSTAGFVVSERRSQLKPATVDDILF 157
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BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Match: A0A821HAW2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821HAW2_9BILA)

HSP 1 Score: 48.5 bits (114), Expect = 8.990e-6
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RALYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFSQR 165
            +++YPN+ARVA+ +L++PAS   +ER FS +G  IT  R+RL  + +   LF +R
Sbjct:   11 KSIYPNLARVAKKILAIPASNTSVERLFSDSGNTITDRRTRLDVDKINNLLFIKR 65
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.200e-1884.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE4.870e-1165.31Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE3.820e-1062.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.510e-963.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI0019661A932.940e-752.00zinc finger BED domain-containing protein DAYSLEEP... [more]
D8LBK4_ECTSI3.100e-758.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA1.150e-660.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM2.950e-655.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
UPI001469E3E54.080e-651.02zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A821HAW2_9BILA8.990e-643.64Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig840contigA-nodosum_M_contig840:252479..252646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra80540
Model size168
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.78e-07
EggNOG OGs299R4@1|root,2RGTA@2759|Eukaryota,3QIGE@4776|Peronosporales
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870201.3207524-UTR-A-nodosum_M_contig840:252478..2524961680870201.3207524-UTR-A-nodosum_M_contig840:252478..252496Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig840 252479..252496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870201.3341103-CDS-A-nodosum_M_contig840:252496..2526461680870201.3341103-CDS-A-nodosum_M_contig840:252496..252646Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 252497..252646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig840.21.1prot_A-nodosum_M_contig840.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig840 252497..252646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig840.21.1

>prot_A-nodosum_M_contig840.21.1 ID=prot_A-nodosum_M_contig840.21.1|Name=mRNA_A-nodosum_M_contig840.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFSQRQ
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mRNA from alignment at A-nodosum_M_contig840:252479..252646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig840.21.1 ID=mRNA_A-nodosum_M_contig840.21.1|Name=mRNA_A-nodosum_M_contig840.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig840:252479..252646+ (Ascophyllum nodosum dioecious)
CGGGCGCTCTACCCGAACATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGT
GCCGGCATCTGCTGCCGTCCTCGAGAGGGACTTCAGCACGGCCGGGCGCC
TCATCACCGGGTCCCGTAGCCGGCTGGCGGGTGAATACGTGGAGATGACG
CTGTTTTCTCAACGGCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig840:252479..252646+

>mRNA_A-nodosum_M_contig840.21.1 ID=mRNA_A-nodosum_M_contig840.21.1|Name=mRNA_A-nodosum_M_contig840.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig840:252479..252646+ (Ascophyllum nodosum dioecious)
ATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCGT
CCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGTA
GCCGGCTGGCGGGTGAATACGTGGAGATGACGCTGTTTTCTCAACGGCAA
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