prot_A-nodosum_M_contig84.42.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig84.42.1
Unique Nameprot_A-nodosum_M_contig84.42.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length229
Homology
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.190e-107
Identity = 185/231 (80.09%), Postives = 208/231 (90.04%), Query Frame = 0
Query:    1 MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNED--TSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXED-IDFEDPEMAALMGFGGFGSSKK 228
            MSKDLGYKQVKNVE+RRTWDRDYYEA+AKERIE+GDD+ + ++   +R   KEEFQPA  GAAGPAGSARA+LKTRE+KVDL+SKLGKTQVVTAASTPSQQGGWYCE+CKCGLKDSINYLDHING+KHQR LGYSMRVERSTVSQVKDRLKMHK+REE+ ISGA +KPSAEDEF++RVRE+ED E   XXXXXXXXXXXXXXXXXX   ++F+DPEMAA+MGFGGFG   K
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSK 231          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.260e-56
Identity = 135/231 (58.44%), Postives = 162/231 (70.13%), Query Frame = 0
Query:    2 SKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGS--KEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEII--SGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 228
            S DLG KQV NV  RR+WD + YE +AKER+E+GD+  +    S   +  KEEFQPAP GA GPAGS RA+LK R +KVDL S+L KTQV+T+A+  S QGG++CEVCKC LKDSI YLDHING+KHQRALG+SMRVERS+V  VK++L   + R E+    SGA RK SA  E+E R+ E        XXXXXXXXXXXXXXXXXX          AA+MGFGGF   K+
Sbjct:    7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 6.620e-48
Identity = 105/220 (47.73%), Postives = 139/220 (63.18%), Query Frame = 0
Query:   12 NVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLG---SKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDA-----ETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGF 223
            NVE RRTWD +++E  AKER+EK  + + + +  + G    +EEFQ A +GAAGP GS RA+LK RE  + L  K+GK QVVT +S P QQGG++C++C+C LKDS+ YLDHING+KHQ+ALGYSMRVER  V +VK+RL   K RE+E      R+ SA D ++ ++ + E       E R+                  E+    DPEMAALMGFGGF
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEK--EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRE-SAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 163 bits (412), Expect = 4.130e-46
Identity = 129/260 (49.62%), Postives = 163/260 (62.69%), Query Frame = 0
Query:    1 MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGS--------------KEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQG-GWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKM-------HKEREEEIISGAARKPSAEDEFESRVRESEDA--------ETRRXXXXXXXXXXXXXXXXXXEDIDFE--DPEMAALMGFGGFGSSKK 228
            M+ +L YKQV NV +RR WD + YE RAKER  + ++    E+T + G+              KEEFQ AP  AAGP GS RAFL+ R++ +DL SK+G +++V+A +   + G GW+C+VC C LKDS+ YLDHING+KHQR LG++MRVERST  QV DRLK         KE   + I        ++DE   R RE +          E  RXXXXXXXXXXXXXXXXXXE++DFE  DPEMAA+MGF GFG   K
Sbjct:    9 MASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.010e-45
Identity = 113/215 (52.56%), Postives = 148/215 (68.84%), Query Frame = 0
Query:   16 RRTWDRDYYEARAKERI--EKGDDFNDNEDTSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 228
            RRTWD   YE +A+ER+  E+G     + D   +  ++EF+ A   AAGPAGSARAFL  R + + L    GKTQ++       + GGWYC+VC+C LKDS NYLDHING+KHQR LG+SMRVERSTV QV +R K+ K+R+E+ +S A R P+A + +E R+  +++ E   XXXXXXXXXXXXXXXXXX  ++  DP++ A MGFGGFG   K
Sbjct:   13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEX-XXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFGGGAK 225          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA)

HSP 1 Score: 159 bits (401), Expect = 9.210e-45
Identity = 114/238 (47.90%), Postives = 147/238 (61.76%), Query Frame = 0
Query:   10 VKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFE-----------------DPEMAALMGFGGFGSSKK 228
            V NV AR+TWDR++YE  AK R E      + E+T ++   SKEEFQ A   AAGPAGSARAFLK R  K+ L + +G  +VV +    S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK RL+   +R+ + +    +K     ++E +V+E+E+ E R     XXXXXXXX       ++  E                 D EM ++MGFGGFG SKK
Sbjct:   13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL)

HSP 1 Score: 159 bits (401), Expect = 3.300e-44
Identity = 107/232 (46.12%), Postives = 139/232 (59.91%), Query Frame = 0
Query:   10 VKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAET--------RRXXXXXXXXXXXXXXXXXXEDIDF---EDPEMAALMGFGGFGSSKK 228
            V NV  R+TWDR +YE  A+ R E G +    E T ++   SKEEFQ A   AAGPAGSARAFLK R  K+ L + +G  +VV +    S+  G+YCEVC+C LKDS+ YLDHING+KH R LGYSMRVERSTV QVKDRL+   +R+ + +    +K  A +E+E +++ +E+AE         +R                  E +D     D EM A+MGFGGFG SKK
Sbjct:   66 VSNV-VRQTWDRAHYEKLAQLRAEGGVE---KETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 155 bits (392), Expect = 1.950e-43
Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 0
Query:   10 VKNVEARRTWDRDYYEA----RAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXE-----DIDFE----------DPEMAALMGFGGFGSSKK 228
            V NV  R+TWDR +YE     RA+ ++EK       E+T ++   +KEEFQ A  GAAGPAGSARAFLK R  K+ L S +G  +VV +    S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK+RL+   +R+ + +   A+K  A +++E +++ +E+     XXXXXXXXXXXXXXXX  E     D D +          D EM A+MGFGGFG SKK
Sbjct:   13 VANV-TRQTWDRAHYEKLAQLRAEGKLEK-------EETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLM--AKKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.360e-42
Identity = 110/230 (47.83%), Postives = 139/230 (60.43%), Query Frame = 0
Query:   10 VKNVEARRTWDRDYYEA----RAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXX-----EDIDFEDPEMAALMGFGGFGSSKK 228
            V NV AR+TWDR +YE     RA+ ++EK       E+T +    SKEEFQ A  GAAGPAGSARAFLK R  K+ L + +G  +VV +    S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK+RL+ ++           +K  A +E E+RV+         XXXXX                  +++   D EM A+MGFGGFG SKK
Sbjct:   16 VANV-ARQTWDRAHYEKLAQLRAEGQLEK-------EETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A2L2YA52_PARTP (Zinc finger matrin-type protein 2-like protein n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YA52_PARTP)

HSP 1 Score: 150 bits (380), Expect = 3.410e-42
Identity = 109/213 (51.17%), Postives = 135/213 (63.38%), Query Frame = 0
Query:   16 RRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 228
            RR WDR+ YE  A+E++E        ED      K + QP            R FLK R+ +VDL SKLGKT V+T  +  SQ GG+YC VC C +KDSIN+LDHING+KHQR LG SMRVERST+ QVK R++M+K + EE           E +FE R++E +D E +  XXXXXXXXXXXXX     D D+ DP+MAA+MGF GF SSKK
Sbjct:   11 RRKWDREEYEKLAQEKLE--------EDEFDFDWKSDKQPPV---------RREFLKPRDYRVDLESKLGKTTVITKTTPASQTGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKQRMEMNKRKREE--------KQKEYDFEQRLQELKDEEEKLRXXXXXXXXXXXXXATESTD-DYGDPDMAAIMGFSGFCSSKK 197          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE1.190e-10780.09U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA1.260e-5658.44U1-type domain-containing protein n=1 Tax=Tribonem... [more]
W7U2Z2_9STRA6.620e-4847.73Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A1Z5KJY6_FISSO4.130e-4649.62U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]
A0A7S2WR40_9STRA2.010e-4552.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R7GK79_9STRA9.210e-4547.90U1-type domain-containing protein n=3 Tax=Phytopht... [more]
A0A0P1ATE8_PLAHL3.300e-4446.12Zinc finger matrin-type protein 2 n=1 Tax=Plasmopa... [more]
W2PLF3_PHYPN1.950e-4351.25U1-type domain-containing protein n=11 Tax=Phytoph... [more]
A0A8J5JCN4_9STRA1.360e-4247.83zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
A0A2L2YA52_PARTP3.410e-4251.17Zinc finger matrin-type protein 2-like protein n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 179..206
NoneNo IPR availablePFAMPF12874zf-metcoord: 102..126
e-value: 3.4E-6
score: 27.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 78..131
e-value: 1.0E-6
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..67
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 99..133
e-value: 3.1E-8
score: 43.4
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 8..228
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 96..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:130116..133000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.42.1mRNA_A-nodosum_M_contig84.42.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig84 130095..134150 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig84.42.1 ID=prot_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp
MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGSK
EEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQG
GWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKM
HKEREEEIISGAARKPSAEDEFESRVRESEDAETRRKRQKKESKRLAKKK
QQKEEDIDFEDPEMAALMGFGGFGSSKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR040107Snu23
IPR036236Znf_C2H2_sf