mRNA_A-nodosum_M_contig84.42.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 319 bits (817), Expect = 2.660e-102 Identity = 185/231 (80.09%), Postives = 208/231 (90.04%), Query Frame = 1
Query: 22 MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNED--TSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXED-IDFEDPEMAALMGFGGFGSSKK 705
MSKDLGYKQVKNVE+RRTWDRDYYEA+AKERIE+GDD+ + ++ +R KEEFQPA GAAGPAGSARA+LKTRE+KVDL+SKLGKTQVVTAASTPSQQGGWYCE+CKCGLKDSINYLDHING+KHQR LGYSMRVERSTVSQVKDRLKMHK+REE+ ISGA +KPSAEDEF++RVRE+ED E XXXXXXXXXXXXXXXXXX ++F+DPEMAA+MGFGGFG K
Sbjct: 1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSK 231
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.970e-52 Identity = 135/231 (58.44%), Postives = 162/231 (70.13%), Query Frame = 1
Query: 25 SKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGS--KEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEII--SGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 705
S DLG KQV NV RR+WD + YE +AKER+E+GD+ + S + KEEFQPAP GA GPAGS RA+LK R +KVDL S+L KTQV+T+A+ S QGG++CEVCKC LKDSI YLDHING+KHQRALG+SMRVERS+V VK++L + R E+ SGA RK SA E+E R+ E XXXXXXXXXXXXXXXXXX AA+MGFGGF K+
Sbjct: 7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 166 bits (421), Expect = 5.450e-44 Identity = 105/220 (47.73%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 55 NVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLG---SKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDA-----ETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGF 690
NVE RRTWD +++E AKER+EK + + + + + G +EEFQ A +GAAGP GS RA+LK RE + L K+GK QVVT +S P QQGG++C++C+C LKDS+ YLDHING+KHQ+ALGYSMRVER V +VK+RL K RE+E R+ SA D ++ ++ + E E R+ E+ DPEMAALMGFGGF
Sbjct: 17 NVE-RRTWDLEHFEKIAKERLEK--EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRE-SAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO) HSP 1 Score: 166 bits (419), Expect = 2.930e-43 Identity = 130/261 (49.81%), Postives = 164/261 (62.84%), Query Frame = 1
Query: 19 TMSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGS--------------KEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQG-GWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKM-------HKEREEEIISGAARKPSAEDEFESRVRESEDA--------ETRRXXXXXXXXXXXXXXXXXXEDIDFE--DPEMAALMGFGGFGSSKK 705
TM+ +L YKQV NV +RR WD + YE RAKER + ++ E+T + G+ KEEFQ AP AAGP GS RAFL+ R++ +DL SK+G +++V+A + + G GW+C+VC C LKDS+ YLDHING+KHQR LG++MRVERST QV DRLK KE + I ++DE R RE + E RXXXXXXXXXXXXXXXXXXE++DFE DPEMAA+MGF GFG K
Sbjct: 8 TMASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 160 bits (406), Expect = 6.200e-42 Identity = 113/215 (52.56%), Postives = 148/215 (68.84%), Query Frame = 1
Query: 67 RRTWDRDYYEARAKERI--EKGDDFNDNEDTSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 705
RRTWD YE +A+ER+ E+G + D + ++EF+ A AAGPAGSARAFL R + + L GKTQ++ + GGWYC+VC+C LKDS NYLDHING+KHQR LG+SMRVERSTV QV +R K+ K+R+E+ +S A R P+A + +E R+ +++ E XXXXXXXXXXXXXXXXXX ++ DP++ A MGFGGFG K
Sbjct: 13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEX-XXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFGGGAK 225
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.720e-41 Identity = 114/238 (47.90%), Postives = 147/238 (61.76%), Query Frame = 1
Query: 49 VKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFE-----------------DPEMAALMGFGGFGSSKK 705
V NV AR+TWDR++YE AK R E + E+T ++ SKEEFQ A AAGPAGSARAFLK R K+ L + +G +VV + S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK RL+ +R+ + + +K ++E +V+E+E+ E R XXXXXXXX ++ E D EM ++MGFGGFG SKK
Sbjct: 13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL) HSP 1 Score: 159 bits (402), Expect = 1.340e-40 Identity = 107/232 (46.12%), Postives = 139/232 (59.91%), Query Frame = 1
Query: 49 VKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAET--------RRXXXXXXXXXXXXXXXXXXEDIDF---EDPEMAALMGFGGFGSSKK 705
V NV R+TWDR +YE A+ R E G + E T ++ SKEEFQ A AAGPAGSARAFLK R K+ L + +G +VV + S+ G+YCEVC+C LKDS+ YLDHING+KH R LGYSMRVERSTV QVKDRL+ +R+ + + +K A +E+E +++ +E+AE +R E +D D EM A+MGFGGFG SKK
Sbjct: 66 VSNV-VRQTWDRAHYEKLAQLRAEGGVE---KETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN) HSP 1 Score: 155 bits (393), Expect = 6.560e-40 Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 1
Query: 49 VKNVEARRTWDRDYYEA----RAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXE-----DIDFE----------DPEMAALMGFGGFGSSKK 705
V NV R+TWDR +YE RA+ ++EK E+T ++ +KEEFQ A GAAGPAGSARAFLK R K+ L S +G +VV + S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK+RL+ +R+ + + A+K A +++E +++ +E+ XXXXXXXXXXXXXXXX E D D + D EM A+MGFGGFG SKK
Sbjct: 13 VANV-TRQTWDRAHYEKLAQLRAEGKLEK-------EETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLM--AKKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA) HSP 1 Score: 153 bits (386), Expect = 3.930e-39 Identity = 110/230 (47.83%), Postives = 139/230 (60.43%), Query Frame = 1
Query: 49 VKNVEARRTWDRDYYEA----RAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXX-----EDIDFEDPEMAALMGFGGFGSSKK 705
V NV AR+TWDR +YE RA+ ++EK E+T + SKEEFQ A GAAGPAGSARAFLK R K+ L + +G +VV + S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK+RL+ ++ +K A +E E+RV+ XXXXX +++ D EM A+MGFGGFG SKK
Sbjct: 16 VANV-ARQTWDRAHYEKLAQLRAEGQLEK-------EETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A2L2YA52_PARTP (Zinc finger matrin-type protein 2-like protein n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YA52_PARTP) HSP 1 Score: 151 bits (382), Expect = 6.370e-39 Identity = 109/213 (51.17%), Postives = 135/213 (63.38%), Query Frame = 1
Query: 67 RRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 705
RR WDR+ YE A+E++E ED K + QP R FLK R+ +VDL SKLGKT V+T + SQ GG+YC VC C +KDSIN+LDHING+KHQR LG SMRVERST+ QVK R++M+K + EE E +FE R++E +D E + XXXXXXXXXXXXX D D+ DP+MAA+MGF GF SSKK
Sbjct: 11 RRKWDREEYEKLAQEKLE--------EDEFDFDWKSDKQPPV---------RREFLKPRDYRVDLESKLGKTTVITKTTPASQTGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKQRMEMNKRKREE--------KQKEYDFEQRLQELKDEEEKLRXXXXXXXXXXXXXATESTD-DYGDPDMAAIMGFSGFCSSKK 197 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig84.42.1 >prot_A-nodosum_M_contig84.42.1 ID=prot_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGSKback to top mRNA from alignment at A-nodosum_M_contig84:130095..134150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig84.42.1 ID=mRNA_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4056bp|location=Sequence derived from alignment at A-nodosum_M_contig84:130095..134150+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig84:130095..134150+ >mRNA_A-nodosum_M_contig84.42.1 ID=mRNA_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=687bp|location=Sequence derived from alignment at A-nodosum_M_contig84:130095..134150+ (Ascophyllum nodosum dioecious)back to top |