mRNA_A-nodosum_M_contig84.42.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig84.42.1
Unique NamemRNA_A-nodosum_M_contig84.42.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 2.660e-102
Identity = 185/231 (80.09%), Postives = 208/231 (90.04%), Query Frame = 1
Query:   22 MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNED--TSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXED-IDFEDPEMAALMGFGGFGSSKK 705
            MSKDLGYKQVKNVE+RRTWDRDYYEA+AKERIE+GDD+ + ++   +R   KEEFQPA  GAAGPAGSARA+LKTRE+KVDL+SKLGKTQVVTAASTPSQQGGWYCE+CKCGLKDSINYLDHING+KHQR LGYSMRVERSTVSQVKDRLKMHK+REE+ ISGA +KPSAEDEF++RVRE+ED E   XXXXXXXXXXXXXXXXXX   ++F+DPEMAA+MGFGGFG   K
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSK 231          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.970e-52
Identity = 135/231 (58.44%), Postives = 162/231 (70.13%), Query Frame = 1
Query:   25 SKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGS--KEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEII--SGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 705
            S DLG KQV NV  RR+WD + YE +AKER+E+GD+  +    S   +  KEEFQPAP GA GPAGS RA+LK R +KVDL S+L KTQV+T+A+  S QGG++CEVCKC LKDSI YLDHING+KHQRALG+SMRVERS+V  VK++L   + R E+    SGA RK SA  E+E R+ E        XXXXXXXXXXXXXXXXXX          AA+MGFGGF   K+
Sbjct:    7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.450e-44
Identity = 105/220 (47.73%), Postives = 139/220 (63.18%), Query Frame = 1
Query:   55 NVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLG---SKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDA-----ETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGF 690
            NVE RRTWD +++E  AKER+EK  + + + +  + G    +EEFQ A +GAAGP GS RA+LK RE  + L  K+GK QVVT +S P QQGG++C++C+C LKDS+ YLDHING+KHQ+ALGYSMRVER  V +VK+RL   K RE+E      R+ SA D ++ ++ + E       E R+                  E+    DPEMAALMGFGGF
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEK--EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRE-SAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 166 bits (419), Expect = 2.930e-43
Identity = 130/261 (49.81%), Postives = 164/261 (62.84%), Query Frame = 1
Query:   19 TMSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGS--------------KEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQG-GWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKM-------HKEREEEIISGAARKPSAEDEFESRVRESEDA--------ETRRXXXXXXXXXXXXXXXXXXEDIDFE--DPEMAALMGFGGFGSSKK 705
            TM+ +L YKQV NV +RR WD + YE RAKER  + ++    E+T + G+              KEEFQ AP  AAGP GS RAFL+ R++ +DL SK+G +++V+A +   + G GW+C+VC C LKDS+ YLDHING+KHQR LG++MRVERST  QV DRLK         KE   + I        ++DE   R RE +          E  RXXXXXXXXXXXXXXXXXXE++DFE  DPEMAA+MGF GFG   K
Sbjct:    8 TMASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.200e-42
Identity = 113/215 (52.56%), Postives = 148/215 (68.84%), Query Frame = 1
Query:   67 RRTWDRDYYEARAKERI--EKGDDFNDNEDTSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 705
            RRTWD   YE +A+ER+  E+G     + D   +  ++EF+ A   AAGPAGSARAFL  R + + L    GKTQ++       + GGWYC+VC+C LKDS NYLDHING+KHQR LG+SMRVERSTV QV +R K+ K+R+E+ +S A R P+A + +E R+  +++ E   XXXXXXXXXXXXXXXXXX  ++  DP++ A MGFGGFG   K
Sbjct:   13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEX-XXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFGGGAK 225          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.720e-41
Identity = 114/238 (47.90%), Postives = 147/238 (61.76%), Query Frame = 1
Query:   49 VKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFE-----------------DPEMAALMGFGGFGSSKK 705
            V NV AR+TWDR++YE  AK R E      + E+T ++   SKEEFQ A   AAGPAGSARAFLK R  K+ L + +G  +VV +    S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK RL+   +R+ + +    +K     ++E +V+E+E+ E R     XXXXXXXX       ++  E                 D EM ++MGFGGFG SKK
Sbjct:   13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL)

HSP 1 Score: 159 bits (402), Expect = 1.340e-40
Identity = 107/232 (46.12%), Postives = 139/232 (59.91%), Query Frame = 1
Query:   49 VKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAET--------RRXXXXXXXXXXXXXXXXXXEDIDF---EDPEMAALMGFGGFGSSKK 705
            V NV  R+TWDR +YE  A+ R E G +    E T ++   SKEEFQ A   AAGPAGSARAFLK R  K+ L + +G  +VV +    S+  G+YCEVC+C LKDS+ YLDHING+KH R LGYSMRVERSTV QVKDRL+   +R+ + +    +K  A +E+E +++ +E+AE         +R                  E +D     D EM A+MGFGGFG SKK
Sbjct:   66 VSNV-VRQTWDRAHYEKLAQLRAEGGVE---KETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 155 bits (393), Expect = 6.560e-40
Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 1
Query:   49 VKNVEARRTWDRDYYEA----RAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXE-----DIDFE----------DPEMAALMGFGGFGSSKK 705
            V NV  R+TWDR +YE     RA+ ++EK       E+T ++   +KEEFQ A  GAAGPAGSARAFLK R  K+ L S +G  +VV +    S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK+RL+   +R+ + +   A+K  A +++E +++ +E+     XXXXXXXXXXXXXXXX  E     D D +          D EM A+MGFGGFG SKK
Sbjct:   13 VANV-TRQTWDRAHYEKLAQLRAEGKLEK-------EETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLM--AKKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.930e-39
Identity = 110/230 (47.83%), Postives = 139/230 (60.43%), Query Frame = 1
Query:   49 VKNVEARRTWDRDYYEA----RAKERIEKGDDFNDNEDTSRL--GSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXX-----EDIDFEDPEMAALMGFGGFGSSKK 705
            V NV AR+TWDR +YE     RA+ ++EK       E+T +    SKEEFQ A  GAAGPAGSARAFLK R  K+ L + +G  +VV +    S+ GG+YCEVC+CGLKDS+ YLDHING+KH R LGYSMRVERSTV QVK+RL+ ++           +K  A +E E+RV+         XXXXX                  +++   D EM A+MGFGGFG SKK
Sbjct:   16 VANV-ARQTWDRAHYEKLAQLRAEGQLEK-------EETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225          
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Match: A0A2L2YA52_PARTP (Zinc finger matrin-type protein 2-like protein n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YA52_PARTP)

HSP 1 Score: 151 bits (382), Expect = 6.370e-39
Identity = 109/213 (51.17%), Postives = 135/213 (63.38%), Query Frame = 1
Query:   67 RRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGSKEEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQGGWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKMHKEREEEIISGAARKPSAEDEFESRVRESEDAETRRXXXXXXXXXXXXXXXXXXEDIDFEDPEMAALMGFGGFGSSKK 705
            RR WDR+ YE  A+E++E        ED      K + QP            R FLK R+ +VDL SKLGKT V+T  +  SQ GG+YC VC C +KDSIN+LDHING+KHQR LG SMRVERST+ QVK R++M+K + EE           E +FE R++E +D E +  XXXXXXXXXXXXX     D D+ DP+MAA+MGF GF SSKK
Sbjct:   11 RRKWDREEYEKLAQEKLE--------EDEFDFDWKSDKQPPV---------RREFLKPRDYRVDLESKLGKTTVITKTTPASQTGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKQRMEMNKRKREE--------KQKEYDFEQRLQELKDEEEKLRXXXXXXXXXXXXXATESTD-DYGDPDMAAIMGFSGFCSSKK 197          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE2.660e-10280.09U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA1.970e-5258.44U1-type domain-containing protein n=1 Tax=Tribonem... [more]
W7U2Z2_9STRA5.450e-4447.73Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A1Z5KJY6_FISSO2.930e-4349.81U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]
A0A7S2WR40_9STRA6.200e-4252.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R7GK79_9STRA3.720e-4147.90U1-type domain-containing protein n=3 Tax=Phytopht... [more]
A0A0P1ATE8_PLAHL1.340e-4046.12Zinc finger matrin-type protein 2 n=1 Tax=Plasmopa... [more]
W2PLF3_PHYPN6.560e-4051.25U1-type domain-containing protein n=11 Tax=Phytoph... [more]
A0A8J5JCN4_9STRA3.930e-3947.83zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
A0A2L2YA52_PARTP6.370e-3951.17Zinc finger matrin-type protein 2-like protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:130095..134150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ99
Preferred nameSNU23
PFAMszf-C2H2_jaz,zf-met
Model size1858
Max annot lvl2759|Eukaryota
KEGG koko:K12848
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons4
Evalue7.92e-108
EggNOG OGsKOG4727@1|root,KOG4727@2759|Eukaryota
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-26_005600.1
DescriptionmRNA splicing, via spliceosome
Cds size687
COG categoryA
BRITEko00000,ko00001,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.42.1prot_A-nodosum_M_contig84.42.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig84 130116..133000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870195.8194413-UTR-A-nodosum_M_contig84:130094..1301151680870195.8194413-UTR-A-nodosum_M_contig84:130094..130115Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 130095..130115 +
1680870195.880707-UTR-A-nodosum_M_contig84:133000..1341501680870195.880707-UTR-A-nodosum_M_contig84:133000..134150Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 133001..134150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870195.8354867-CDS-A-nodosum_M_contig84:130115..1303311680870195.8354867-CDS-A-nodosum_M_contig84:130115..130331Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 130116..130331 +
1680870195.8476675-CDS-A-nodosum_M_contig84:131510..1317231680870195.8476675-CDS-A-nodosum_M_contig84:131510..131723Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 131511..131723 +
1680870195.8581154-CDS-A-nodosum_M_contig84:132321..1324321680870195.8581154-CDS-A-nodosum_M_contig84:132321..132432Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 132322..132432 +
1680870195.8696775-CDS-A-nodosum_M_contig84:132853..1330001680870195.8696775-CDS-A-nodosum_M_contig84:132853..133000Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 132854..133000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig84.42.1

>prot_A-nodosum_M_contig84.42.1 ID=prot_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp
MSKDLGYKQVKNVEARRTWDRDYYEARAKERIEKGDDFNDNEDTSRLGSK
EEFQPAPSGAAGPAGSARAFLKTREKKVDLTSKLGKTQVVTAASTPSQQG
GWYCEVCKCGLKDSINYLDHINGRKHQRALGYSMRVERSTVSQVKDRLKM
HKEREEEIISGAARKPSAEDEFESRVRESEDAETRRKRQKKESKRLAKKK
QQKEEDIDFEDPEMAALMGFGGFGSSKK*
back to top

mRNA from alignment at A-nodosum_M_contig84:130095..134150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig84.42.1 ID=mRNA_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4056bp|location=Sequence derived from alignment at A-nodosum_M_contig84:130095..134150+ (Ascophyllum nodosum dioecious)
TCCCGTGGCAACAACGAGACAATGTCAAAGGATTTAGGATACAAGCAGGT GAAGAACGTAGAAGCTAGGCGAACGTGGGACCGCGACTACTATGAAGCCA GAGCGAAGGAACGCATCGAGAAAGGGGACGACTTCAATGACAACGAGGAC ACATCGCGCCTTGGCAGCAAGGAGGAATTCCAGCCTGCCCCCTCTGGAGC GGCGGGGCCGGCCGGCTCTGCGCGTGCCTTCCTCAAGGTACGAGAGACCC ACAGTTGTATCATATTGCTGAAGGTCTGACCTATCCAACTTTGCTTTCTC TATTTTTGTTTTTGTATTCTAGGCCAGTTGCTGCTACTCCCAAACTTGAG GGGGAAACGTGAAGGCACCCTACTACTAGTATTAAATATTAGTACTACGT TGTACTGCAGTTGTACCTTCAAAAGTACGTCGTTGAGTCCGAGTTGCTAG GAACACCTACAGGAGTATTGTACAGCACTCGTTCGGAACTACCTTGAGGT TTTCTGGCCTGTGCCGGCGGACTCTCGGGAGTGAACGCCATCGTTACGCA ATTGCGTGACTCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGCTT TAAATAAATAAATGGACGCCGCGCCGCCGCGGAACTCGGGAGGAATCCCG TAAGTAAGCACCATATTCAGAGTATGGAGATGAGCAGACTGACGCGGGAC GGGACTGCCGAACCCGTTTCGCGAGACCAAATTCTCAGGCGCGAACGCGG ACAGGGAAATATCAATTTTCCTTGTTCAGCTCACCACGTGCAGGATTGGC GACCTTACTCGGTTGACCCATACTCTTGCTATGTGTGTGACGCTACACAC GTTGTTCAAAGAAAAATCTGAACGCATCTTGATATTTTGAGCATCCCCCA GTCAGGCGGGAAAAATGTCGAACGTTTTGGTGGGATCATAGGCTGCAAAG ACGAAACCTCTTCATGGCATTAATCGGGTTCCCCGATGGTAGTAACATTG GGTCAACGGTATAATGTCGGGGAGAAGCCCACCGTTGTACTGCACACTTA CATTGATCGCCATGCAGGGACATCAGACAAAACAAAGACATGTTCGTTGT GTTATATGGATTCCTTGGGGCTTTGAGTTGATACATGATATGATATCAGA GGAGGATGTTTACGGTAATGTATCTCCATGCAAGGGCCGTCTGTCTATCT GGCAGGCGAACATAATGGTGCTTCGTCGATGCATACGGTGACAGAAAACA CGCCAAATGATGCCATAGGGAATACCGGTACGAGAACTGTACAGCAGTAT CACGAGAAAACAAGAAGTTCTCAGGCATTAGGATCAAGTTGCCCCCGCAC GATCGCCCCCCCCCGTCCCTTCCCCAATCCCTGCCTGGTACTATTACTAC GACATCTGTCCGCAAGACCCGAGAGAAAAAGGTGGACCTTACTTCCAAGC TGGGGAAGACGCAGGTTGTTACGGCGGCCTCTACTCCGTCCCAGCAGGGG GGCTGGTACTGTGAGGTCTGCAAGTGTGGACTGAAGGACAGCATAAATTA CCTCGACCACATCAACGGGAGGAAGCATCAGAGGGCGCTGGGGTATAGCA TGCGCGTCGAGCGATCCACGGTCTCGCAGGTGAGGGAGAGGTAGAGAGCA GTTGTTGCAAGCAGTACAAGCAGCAGCAGCAGCAGCCTCTGCCACACTGA AGACATACGAGTAGCATTCTCTCGTAGGGGCAATACTTGTATGTGGTATT ATTAGTTTCGAGCTGCAGTATTAATAGTAGCCTGGAATAGAGCTAGAACT AATGTACTAGTACCACGTTACCGTTAAATGTTTCCCCCAGAAATGGTCTG GTTTTCCAGATTGGCCTGAGTTCGTAAAAATAACAACCACTATAAGCATT GGTCTACCTCGTCTACAGACAGTATTATAGTGGATATTGAGTATTTATAG CTCTACTCATGATTACTGGTGGATCGCGGGTGATCCATCGGTTCGAGATC ATGCAGTGAAGTTTTTTCTCATCCAGTTAATGTTCTCGAAGTATCCCCTG GCAGCAAAAGCCAGGGGCGGTAAGTGCAACAGGTTCTAGGGTTTTCTATC AAGAAGCTGCTTCAACTGGGGTCTAATTTTCTTCGCGAGTAGTTTTTTGA AACTATTAATACCAAAATGAGTACAACTACAACTATCGGTACTATATATC AAGTGTTCTCATCTCGCGCTGGGATAGGTGAAGGATCGCCTCAAGATGCA CAAGGAAAGGGAAGAGGAGATCATTTCCGGTGCCGCGCGAAAACCGTCGG CCGAGGACGAGTTCGAATCTAGAGTACGGGAGTCGGAGGTGAGAGGCTAA GGGGGCGCGCCAAAGCATATCCTCGGGCTCGGATCCGGGACTTTTCATGG CATAGGAAATAAATGTGTCGGAGGTGTTCGCAATATCCCTTGTGAATTGC AATGCTGCTGGGACGCGGGAGACGCGTTCGCTCATGTAAAGGAGAACAAT TTTTTAGCGCTTGAGGTTCGTCGAGACTCTATAGACCTTTCAGATGGATT AACTCCTGGGTGCCGCTCCCTTATTCCATTCCATTCCATTCCATTCCATC TCATTCTATTCCATCCCATTCCACCATTGCATCCATTCTGCCTACGAGTA CCTCATATTTTTATGTATGTCTTCCTCCTGTCCCCGCTCCCGCCCCCCCT CCCTACATCGGCCTCGTTCTGGGTTTGCAAATTGTGTGACTTCTGTTACG GTGTCAAAGGACGCCGAAACGCGACGAAAGCGTCAAAAGAAAGAGTCAAA ACGATTGGCGAAGAAGAAGCAACAAAAAGAGGAAGATATCGATTTCGAGG ACCCTGAGATGGCGGCCTTGATGGGGTTCGGCGGCTTCGGGAGTAGCAAA AAGTAGCATCGAATAGAGGCATACCTCTTACCTCTTACTTGTCGTGTGTG TTGCAATGTCATGTGTTCGTGTTGATAGTCTTGAGGGCTTTTGTTGTAGC AATCTGTCCTCCCGAGGAAGTAGTGATAGACCAGAGACACGTTTTACGCT GGGGAGCCTGATTGCGGCGGCCAAGATGGTCGACAGGGCTGCTGCTAGCT GCTACTAGCTGCTACACGTGCATCGCACGAGAAAAGCACAAGGCAAACTT AGCGCCCCTTCCCTGCTCGACGAGCTCCCCACCCCCCCGCGTTAAGCACT TCTTGTGCGCCTCTACCCCCTACGATAATGACGCTAGACGTAATGGGCAT CAGGAAACGCGAATCCGCCTTGGGCTGATACACTAGAGGGAGCAATCTTT TGCCCAATGAAAGCATCGAAGTTAAGATACTCGCAGGAACTGTGACGTGG GGTGGAAGCAAAGAGGTTGCTGGCGACGTGGACTGCGCTATTAATAGGTT TGAAGTGGCAGAAGATATGGCGTCGCCCGAGTGATCTAGTAGGTAATCTG CACACCTGCTAGTGCGGAAGTCGATCATAGCAGGATTTGTGTTCTTTCTT CCGAACCGGAAAGCGTGGGAACGCGAGTATGTAAAATTCAACCATTGATT GACGAGTTGTAAGATTGCTGACCTTACATCGCGATAAATACTCGTAAGGC GTGAACCGGGGGAGAGATGGGAAGATCCTTCGTGACCACAGGCAGGATGG GAATAATGAGGTCCATCGGCTAGTAATGAGATGAAAAAAAGAAACAGAAA AAAAAGTATGGTGTCGGGTCGCCCGGACCACCAGTTAGTTAGCCGTAAAT GAGACTGAGTAGACTACGGGTGACTACCTGCACTGATATTCTGGTGTCGG GTCGTACGGACCACTAGCTACTTCCAAAAGGCAATGTGTCGTACTGTATT ATTTATGGTACGCTTTTGTTTCCGATGCAGGGTTGATATCTGCGAGGAAT GCGATTGAGTCACTGACCTGTTGTGGTGTCATACGGGACGGCATGGGAAC AATAACCTTGTCCAATCAAAAGATGTAGTTACCAGTAAACGATGTCGCCG TAGCCACACCTGTCGCTCACGTGTTCCACTCATGGAGAGCTTCGGAGGCG TATATT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig84:130095..134150+

>mRNA_A-nodosum_M_contig84.42.1 ID=mRNA_A-nodosum_M_contig84.42.1|Name=mRNA_A-nodosum_M_contig84.42.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=687bp|location=Sequence derived from alignment at A-nodosum_M_contig84:130095..134150+ (Ascophyllum nodosum dioecious)
ATGTCAAAGGATTTAGGATACAAGCAGGTGAAGAACGTAGAAGCTAGGCG
AACGTGGGACCGCGACTACTATGAAGCCAGAGCGAAGGAACGCATCGAGA
AAGGGGACGACTTCAATGACAACGAGGACACATCGCGCCTTGGCAGCAAG
GAGGAATTCCAGCCTGCCCCCTCTGGAGCGGCGGGGCCGGCCGGCTCTGC
GCGTGCCTTCCTCAAGACCCGAGAGAAAAAGGTGGACCTTACTTCCAAGC
TGGGGAAGACGCAGGTTGTTACGGCGGCCTCTACTCCGTCCCAGCAGGGG
GGCTGGTACTGTGAGGTCTGCAAGTGTGGACTGAAGGACAGCATAAATTA
CCTCGACCACATCAACGGGAGGAAGCATCAGAGGGCGCTGGGGTATAGCA
TGCGCGTCGAGCGATCCACGGTCTCGCAGGTGAAGGATCGCCTCAAGATG
CACAAGGAAAGGGAAGAGGAGATCATTTCCGGTGCCGCGCGAAAACCGTC
GGCCGAGGACGAGTTCGAATCTAGAGTACGGGAGTCGGAGGACGCCGAAA
CGCGACGAAAGCGTCAAAAGAAAGAGTCAAAACGATTGGCGAAGAAGAAG
CAACAAAAAGAGGAAGATATCGATTTCGAGGACCCTGAGATGGCGGCCTT
GATGGGGTTCGGCGGCTTCGGGAGTAGCAAAAAGTAG
back to top