prot_A-nodosum_M_contig84.30.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig84.30.1
Unique Nameprot_A-nodosum_M_contig84.30.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length724
Homology
BLAST of mRNA_A-nodosum_M_contig84.30.1 vs. uniprot
Match: A0A6H5LKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKJ8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.280e-30
Identity = 258/808 (31.93%), Postives = 326/808 (40.35%), Query Frame = 0
Query:   45 AAGAGRTQSPDA--KDTRVLNSRKKAKTDDADAKLLWSPGKKA--EDRG----GAGSH----NLSSLASSFKERYGEELALCEDEPDESGHSETASSEQPPSSRRTNGLGGGGMEA--VEETARSMSPAKLAVEVQKAKARAREERFGGGAKASSNVARASSIGKPAIQLAVSLTEIP----------ADVRRQLSDASGGEVENGEGTKPSQARVAAPVQIINPIQEAAAAPSIAVSASTKKSSSLTGKVGSRAESARTISAPPAELSAAASIPEKTIDAPQLPIVHAIDAEEDEAD---ESGAEAAVST--EDVIFSRETPSMTVASKRDAPHEGDIAAFE-------------PAAKKMTTALAKVLTLRLRLRSDVANGAADSNPDA---------GVEESKGFEPPNPPEXXXXXXXXXXXXXXXXPTPAPESRVGPIFPEAIMVSSDSIVEPKDPPAPSVACSSSVSPA------------------VETGAPATTSGINSYTPGERAPTPVLIRQNSWGPSFGIFQETETATAAPVNPAAAP-------SNPWIISPDAPTFARNQGRPLARSFPPPTAREKA---------VPVDEKEMERAASSQRERATRSGSMAC------RESDRNGGSVAVPAGGAYKGDGIALRRAPYSNDTALSRPLNRTR---------------PRAAMSIDAR----------------DRTREDPEVQASQPRMLAAW-------AHAPGSKGDDSGGVGTEATNPHGPGQGLELPFDGGAGKLLEKLKREREESLEFERKLTKALLDL 723
            AAG G   +P A  K  R  +SR   K    +  +LWSPGK    EDR     G G +    NLS LA +FKERYGEE+    D PD+     T  S    + +R   L GG      VEE ARSMSPA+LA E QKA+ARARE                 S  KP    A S    P          A     +S         G G K  +   AA     +  Q+      IA +A+ K S+   G  GS   SA T  +P A    A S    T  A  +P +   DAE+ +A    ++G+ AA  T   + I   ETP+                                P+++   +   K+ TLRLRLR+D+   +    P A         G EE K FEPP PP XXXXXXXXXXXXXXXX   A  S VG   P  +   S  I   K P   S++  +S +PA                    T   A  S ++    G       L  Q SWGPSFGI      A A P  PA++P       +NPWI+SP++PTF RN+GRPLA++FP P+   +                   RAA      ATRS   A       R S    G   +  G A +G+G      P       + P   TR               PRA  S                    +R              LA W       A A  + G D+G     A    G    L +   G A +LLE+LKREREESL+FERKLT+AL+DL
Sbjct:   17 AAGVGNGNAPSAVSKAQRRASSRANKKAKTGEPGVLWSPGKGKGPEDRASLDTGGGRNGDVQNLSVLAKNFKERYGEEV----DAPDDDDDGMTTGSSVFETPKRKGRLSGGAKPRTPVEEAARSMSPARLAAEAQKARARAREXXXXXX-----XXXXXXSFSKPPSSPAPSARPFPVGEPPDAPLGAPPPAAMSKVPMNRAAGGHGDKNRKGTNAAVTTTSSQAQQPQGGKGIASTAAPKDSTPANGPGGSSNGSAPTAVSPMAAPKGATSPISATNAAAAVPALVTPDAEKVDASAASKTGSRAAAITIQAEAIPMDETPAAXXXXXXXXXXXXXXXXXXXXXXXXVKKVLTLPSSQSPPSTGGKIHTLRLRLRTDLVADSKQPAPAAPSPATAAGGGAEERKSFEPPTPPXXXXXXXXXXXXXXXXXKKAATVSSVG-SKPSPVAAPSTGI---KKPSVASISTVASAAPAXXXXXXXXXXXXAPAPLATATTPTAVASRLSIPPEGSSPRNLALTLQGSWGPSFGI--PGAPAGAPPPTPASSPDVAAANKTNPWILSPESPTFGRNRGRPLAQAFPKPSQPTRGSXXXXXXXXXXXXXXXXXRAAGLAS--ATRSAGEAASVQPDSRSSSGGCGDGGIREGRALRGNGTPATPRPAGTTPCRASPQGGTRGADVANSSSPLTHPLPRAGASAGMNAQPPLSYGQSGGLLPPERAXXXXXXXXXXXXSLACWPVGSALDAAAETATGTDAG-----AAAASGGFVVLGVRMGGKAAELLERLKREREESLDFERKLTQALMDL 802          
BLAST of mRNA_A-nodosum_M_contig84.30.1 vs. uniprot
Match: D8LQA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA6_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.800e-15
Identity = 123/370 (33.24%), Postives = 166/370 (44.86%), Query Frame = 0
Query:   33 IKRTAGFYNSNGAAGAGRTQSPDAKDT--RVLNSRKKAKTDDADAKLLWSPGKKAEDRGGAGS----------HNLSSLASSFKERYGEELALCEDEPDESGHSETASSEQPPSSRRTNGLGGGGMEA--VEETARSMSPAKLAVEVQKAKARAREERFGGGA--------------KASSNVARASSIGKPAIQLAVSLTEIPADVRRQ--LSDASGGEVENGEGTKPSQARVAAPVQIINPIQEAAAAPSIAVSASTKKSSSLTGKVGSRAESARTISAPPAELSAAASIPEKTIDAPQLPIVHAIDAEEDEAD---ESGAEAAVST--EDVIFSRETPSMTV---ASKRDAPHEGDIAAFEPAAKKM 364
             KR AG  +++ AAG G   +P A     R   SR   K    +  +LWSPGK     G A            HNLS LA  FKERYGEE+   +D+ D+   + ++  E P   +R   L G       VEE ARSMSPA+LA E Q+A+ARAREERFG                  + +  AR   +GKP         + P    R   +S A       G+G K  +   AA     +  Q+      I  +A+ K S+   G  GS + SA T  +P A    A      T  A  +P +   DAEE +A    ++G+ AAV+    + I   ETP+  +   A KR A   GD+AA EP  KK+
Sbjct:   39 XKRAAG--SADAAAGVGNGNAPSAVSNAQRRAGSRANKKAKTGEPGVLWSPGKGKGPEGRASLDTGGWRNGDVHNLSVLAKDFKERYGEEVDAPDDDDDDGMTTGSSVFETP---KRKGRLSGDAKPRTPVEEAARSMSPARLAAEAQRARARAREERFGXXXXXXXXXXXXXXXPPSSLAPPARPFPVGKP--------PDAPRGAPRAAAVSKAPMNRAAGGQGDKNGKGTNAAVTTTSSQAQQPQGGKGIVRTAAPKGSTPAIGPGGSSSGSAPTAVSPVAAPQGATFPVSVTSAAVTVPALVTPDAEEVDASAASKTGSRAAVTAVQAEAIPMDETPAAAISAAAPKRPAAEGGDVAAAEPPVKKI 395          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.30.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKJ8_9PHAE3.280e-3031.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA6_ECTSI3.800e-1533.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 695..715
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 619..700
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..496
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 511..598
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 459..485
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 557..574
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 633..648

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:80455..83322 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.30.1mRNA_A-nodosum_M_contig84.30.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig84 80455..83764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig84.30.1 ID=prot_A-nodosum_M_contig84.30.1|Name=mRNA_A-nodosum_M_contig84.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=724bp
MANDRRKCDGKAGSKEGKTGGGRGHPRNISRGIKRTAGFYNSNGAAGAGR
TQSPDAKDTRVLNSRKKAKTDDADAKLLWSPGKKAEDRGGAGSHNLSSLA
SSFKERYGEELALCEDEPDESGHSETASSEQPPSSRRTNGLGGGGMEAVE
ETARSMSPAKLAVEVQKAKARAREERFGGGAKASSNVARASSIGKPAIQL
AVSLTEIPADVRRQLSDASGGEVENGEGTKPSQARVAAPVQIINPIQEAA
AAPSIAVSASTKKSSSLTGKVGSRAESARTISAPPAELSAAASIPEKTID
APQLPIVHAIDAEEDEADESGAEAAVSTEDVIFSRETPSMTVASKRDAPH
EGDIAAFEPAAKKMTTALAKVLTLRLRLRSDVANGAADSNPDAGVEESKG
FEPPNPPEDSGVEECKGFDPPNLPPTPAPESRVGPIFPEAIMVSSDSIVE
PKDPPAPSVACSSSVSPAVETGAPATTSGINSYTPGERAPTPVLIRQNSW
GPSFGIFQETETATAAPVNPAAAPSNPWIISPDAPTFARNQGRPLARSFP
PPTAREKAVPVDEKEMERAASSQRERATRSGSMACRESDRNGGSVAVPAG
GAYKGDGIALRRAPYSNDTALSRPLNRTRPRAAMSIDARDRTREDPEVQA
SQPRMLAAWAHAPGSKGDDSGGVGTEATNPHGPGQGLELPFDGGAGKLLE
KLKREREESLEFERKLTKALLDL*
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