mRNA_A-nodosum_M_contig84.30.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig84.30.1 vs. uniprot
Match: A0A6H5LKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKJ8_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.530e-30 Identity = 258/808 (31.93%), Postives = 326/808 (40.35%), Query Frame = 1
Query: 133 AAGAGRTQSPDA--KDTRVLNSRKKAKTDDADAKLLWSPGKKA--EDRG----GAGSH----NLSSLASSFKERYGEELALCEDEPDESGHSETASSEQPPSSRRTNGLGGGGMEA--VEETARSMSPAKLAVEVQKAKARAREERFGGGAKASSNVARASSIGKPAIQLAVSLTEIP----------ADVRRQLSDASGGEVENGEGTKPSQARVAAPVQIINPIQEAAAAPSIAVSASTKKSSSLTGKVGSRAESARTISAPPAELSAAASIPEKTIDAPQLPIVHAIDAEEDEAD---ESGAEAAVST--EDVIFSRETPSMTVASKRDAPHEGDIAAFE-------------PAAKKMTTALAKVLTLRLRLRSDVANGAADSNPDA---------GVEESKGFEPPNPPEXXXXXXXXXXXXXXXXPTPAPESRVGPIFPEAIMVSSDSIVEPKDPPAPSVACSSSVSPA------------------VETGAPATTSGINSYTPGERAPTPVLIRQNSWGPSFGIFQETETATAAPVNPAAAP-------SNPWIISPDAPTFARNQGRPLARSFPPPTAREKA---------VPVDEKEMERAASSQRERATRSGSMAC------RESDRNGGSVAVPAGGAYKGDGIALRRAPYSNDTALSRPLNRTR---------------PRAAMSIDAR----------------DRTREDPEVQASQPRMLAAW-------AHAPGSKGDDSGGVGTEATNPHGPGQGLELPFDGGAGKLLEKLKREREESLEFERKLTKALLDL 2169
AAG G +P A K R +SR K + +LWSPGK EDR G G + NLS LA +FKERYGEE+ D PD+ T S + +R L GG VEE ARSMSPA+LA E QKA+ARARE S KP A S P A +S G G K + AA + Q+ IA +A+ K S+ G GS SA T +P A A S T A +P + DAE+ +A ++G+ AA T + I ETP+ P+++ + K+ TLRLRLR+D+ + P A G EE K FEPP PP XXXXXXXXXXXXXXXX A S VG P + S I K P S++ +S +PA T A S ++ G L Q SWGPSFGI A A P PA++P +NPWI+SP++PTF RN+GRPLA++FP P+ + RAA ATRS A R S G + G A +G+G P + P TR PRA S +R LA W A A + G D+G A G L + G A +LLE+LKREREESL+FERKLT+AL+DL
Sbjct: 17 AAGVGNGNAPSAVSKAQRRASSRANKKAKTGEPGVLWSPGKGKGPEDRASLDTGGGRNGDVQNLSVLAKNFKERYGEEV----DAPDDDDDGMTTGSSVFETPKRKGRLSGGAKPRTPVEEAARSMSPARLAAEAQKARARAREXXXXXX-----XXXXXXSFSKPPSSPAPSARPFPVGEPPDAPLGAPPPAAMSKVPMNRAAGGHGDKNRKGTNAAVTTTSSQAQQPQGGKGIASTAAPKDSTPANGPGGSSNGSAPTAVSPMAAPKGATSPISATNAAAAVPALVTPDAEKVDASAASKTGSRAAAITIQAEAIPMDETPAAXXXXXXXXXXXXXXXXXXXXXXXXVKKVLTLPSSQSPPSTGGKIHTLRLRLRTDLVADSKQPAPAAPSPATAAGGGAEERKSFEPPTPPXXXXXXXXXXXXXXXXXKKAATVSSVG-SKPSPVAAPSTGI---KKPSVASISTVASAAPAXXXXXXXXXXXXAPAPLATATTPTAVASRLSIPPEGSSPRNLALTLQGSWGPSFGI--PGAPAGAPPPTPASSPDVAAANKTNPWILSPESPTFGRNRGRPLAQAFPKPSQPTRGSXXXXXXXXXXXXXXXXXRAAGLAS--ATRSAGEAASVQPDSRSSSGGCGDGGIREGRALRGNGTPATPRPAGTTPCRASPQGGTRGADVANSSSPLTHPLPRAGASAGMNAQPPLSYGQSGGLLPPERAXXXXXXXXXXXXSLACWPVGSALDAAAETATGTDAG-----AAAASGGFVVLGVRMGGKAAELLERLKREREESLDFERKLTQALMDL 802
BLAST of mRNA_A-nodosum_M_contig84.30.1 vs. uniprot
Match: D8LQA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA6_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 5.050e-15 Identity = 123/370 (33.24%), Postives = 166/370 (44.86%), Query Frame = 1
Query: 97 IKRTAGFYNSNGAAGAGRTQSPDAKDT--RVLNSRKKAKTDDADAKLLWSPGKKAEDRGGAGS----------HNLSSLASSFKERYGEELALCEDEPDESGHSETASSEQPPSSRRTNGLGGGGMEA--VEETARSMSPAKLAVEVQKAKARAREERFGGGA--------------KASSNVARASSIGKPAIQLAVSLTEIPADVRRQ--LSDASGGEVENGEGTKPSQARVAAPVQIINPIQEAAAAPSIAVSASTKKSSSLTGKVGSRAESARTISAPPAELSAAASIPEKTIDAPQLPIVHAIDAEEDEAD---ESGAEAAVST--EDVIFSRETPSMTV---ASKRDAPHEGDIAAFEPAAKKM 1092
KR AG +++ AAG G +P A R SR K + +LWSPGK G A HNLS LA FKERYGEE+ +D+ D+ + ++ E P +R L G VEE ARSMSPA+LA E Q+A+ARAREERFG + + AR +GKP + P R +S A G+G K + AA + Q+ I +A+ K S+ G GS + SA T +P A A T A +P + DAEE +A ++G+ AAV+ + I ETP+ + A KR A GD+AA EP KK+
Sbjct: 39 XKRAAG--SADAAAGVGNGNAPSAVSNAQRRAGSRANKKAKTGEPGVLWSPGKGKGPEGRASLDTGGWRNGDVHNLSVLAKDFKERYGEEVDAPDDDDDDGMTTGSSVFETP---KRKGRLSGDAKPRTPVEEAARSMSPARLAAEAQRARARAREERFGXXXXXXXXXXXXXXXPPSSLAPPARPFPVGKP--------PDAPRGAPRAAAVSKAPMNRAAGGQGDKNGKGTNAAVTTTSSQAQQPQGGKGIVRTAAPKGSTPAIGPGGSSSGSAPTAVSPVAAPQGATFPVSVTSAAVTVPALVTPDAEEVDASAASKTGSRAAVTAVQAEAIPMDETPAAAISAAAPKRPAAEGGDVAAAEPPVKKI 395 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig84.30.1 >prot_A-nodosum_M_contig84.30.1 ID=prot_A-nodosum_M_contig84.30.1|Name=mRNA_A-nodosum_M_contig84.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=724bp MANDRRKCDGKAGSKEGKTGGGRGHPRNISRGIKRTAGFYNSNGAAGAGRback to top mRNA from alignment at A-nodosum_M_contig84:80455..83764+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig84.30.1 ID=mRNA_A-nodosum_M_contig84.30.1|Name=mRNA_A-nodosum_M_contig84.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3310bp|location=Sequence derived from alignment at A-nodosum_M_contig84:80455..83764+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig84:80455..83764+ >mRNA_A-nodosum_M_contig84.30.1 ID=mRNA_A-nodosum_M_contig84.30.1|Name=mRNA_A-nodosum_M_contig84.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2172bp|location=Sequence derived from alignment at A-nodosum_M_contig84:80455..83764+ (Ascophyllum nodosum dioecious)back to top |