prot_A-nodosum_M_contig8392.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8392.1.1
Unique Nameprot_A-nodosum_M_contig8392.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length82
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.470e-18
Identity = 50/80 (62.50%), Postives = 55/80 (68.75%), Query Frame = 0 
Query:    1 GLGDAQDALQLVSRFDSGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGDVQNAMKNGGQVRSLQLLKVVLVGSPSAGKT 80
            GLG+ +DAL+LV R      SL L  NPW MPPE VVE GL A+  YL DV+ A K G  V SLQLLKVVLVGS SAGKT
Sbjct:    8 GLGETEDALRLVERLGD---SLYLHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKT 84
[Close]
BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.570e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0 
Query:    2 LGDAQDALQLVSRFD--SGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGDVQNAMKNGGQVRSLQLLKVVLVGSPSAGKT 80
            LG A+ ALQ V+R    +  ++L L  NPW MPPE +V +GL A+  YL DV+ A + G +V++L +LKVVL+GSP AGKT
Sbjct:  318 LGQAEQALQFVARLGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKT 398
[Close]
BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.060e-13
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0 
Query:    2 LGDAQDALQLVSRFDSGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGDVQNAMKNGGQVRSLQLLKVVLVGSPSAGKT 80
            +G+A+ AL+ ++R       ++L  NPW MPPE VVE+GL A+ +YL DV+ A + G +V++L+LLKVVLVGS  AGKT
Sbjct:  161 VGEAEHALRWLTRRSECL--IVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKT 237
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE1.470e-1862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI7.570e-1650.62LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE2.060e-1350.63Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8392contigA-nodosum_M_contig8392:112..357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8392.1.1mRNA_A-nodosum_M_contig8392.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8392 112..357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8392.1.1 ID=prot_A-nodosum_M_contig8392.1.1|Name=mRNA_A-nodosum_M_contig8392.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
GLGDAQDALQLVSRFDSGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGD
VQNAMKNGGQVRSLQLLKVVLVGSPSAGKTR*
back to top