mRNA_A-nodosum_M_contig8392.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8392.1.1
Unique NamemRNA_A-nodosum_M_contig8392.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.470e-18
Identity = 50/80 (62.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 GLGDAQDALQLVSRFDSGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGDVQNAMKNGGQVRSLQLLKVVLVGSPSAGKT 240
            GLG+ +DAL+LV R      SL L  NPW MPPE VVE GL A+  YL DV+ A K G  V SLQLLKVVLVGS SAGKT
Sbjct:    8 GLGETEDALRLVERLGD---SLYLHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKT 84
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BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.570e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    4 LGDAQDALQLVSRFD--SGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGDVQNAMKNGGQVRSLQLLKVVLVGSPSAGKT 240
            LG A+ ALQ V+R    +  ++L L  NPW MPPE +V +GL A+  YL DV+ A + G +V++L +LKVVL+GSP AGKT
Sbjct:  318 LGQAEQALQFVARLGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKT 398
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BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.060e-13
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    4 LGDAQDALQLVSRFDSGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGDVQNAMKNGGQVRSLQLLKVVLVGSPSAGKT 240
            +G+A+ AL+ ++R       ++L  NPW MPPE VVE+GL A+ +YL DV+ A + G +V++L+LLKVVLVGS  AGKT
Sbjct:  161 VGEAEHALRWLTRRSECL--IVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKT 237
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8392.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE1.470e-1862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI7.570e-1650.62LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE2.060e-1350.63Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8392contigA-nodosum_M_contig8392:112..357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVX5
Preferred nameSLITRK2
PFAMsLRR_8
Model size246
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons1
Evalue1.24e-16
EggNOG OGs2CMPC@1|root,2QR6C@2759|Eukaryota
Descriptionpositive regulation of synapse assembly
Cds size246
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870192.148859-CDS-A-nodosum_M_contig8392:111..3571680870192.148859-CDS-A-nodosum_M_contig8392:111..357Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8392 112..357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8392.1.1prot_A-nodosum_M_contig8392.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8392 112..357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8392.1.1

>prot_A-nodosum_M_contig8392.1.1 ID=prot_A-nodosum_M_contig8392.1.1|Name=mRNA_A-nodosum_M_contig8392.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
GLGDAQDALQLVSRFDSGTKSLLLIPNPWKMPPEAVVEQGLGAIMTYLGD
VQNAMKNGGQVRSLQLLKVVLVGSPSAGKTR*
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mRNA from alignment at A-nodosum_M_contig8392:112..357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8392.1.1 ID=mRNA_A-nodosum_M_contig8392.1.1|Name=mRNA_A-nodosum_M_contig8392.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig8392:112..357+ (Ascophyllum nodosum dioecious)
GGTCTTGGCGACGCTCAAGATGCACTACAGCTCGTATCGAGATTCGATTC
CGGCACGAAGTCGTTGTTGTTGATACCCAACCCGTGGAAAATGCCCCCTG
AAGCAGTAGTAGAGCAGGGACTGGGGGCTATCATGACATATCTCGGTGAC
GTTCAAAATGCCATGAAGAATGGCGGTCAAGTTAGATCCCTGCAGCTTCT
AAAGGTTGTCCTCGTGGGATCCCCGTCTGCGGGGAAAACCAGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8392:112..357+

>mRNA_A-nodosum_M_contig8392.1.1 ID=mRNA_A-nodosum_M_contig8392.1.1|Name=mRNA_A-nodosum_M_contig8392.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig8392:112..357+ (Ascophyllum nodosum dioecious)
GGTCTTGGCGACGCTCAAGATGCACTACAGCTCGTATCGAGATTCGATTC
CGGCACGAAGTCGTTGTTGTTGATACCCAACCCGTGGAAAATGCCCCCTG
AAGCAGTAGTAGAGCAGGGACTGGGGGCTATCATGACATATCTCGGTGAC
GTTCAAAATGCCATGAAGAATGGCGGTCAAGTTAGATCCCTGCAGCTTCT
AAAGGTTGTCCTCGTGGGATCCCCGTCTGCGGGGAAAACCAGGTGA
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