prot_A-nodosum_M_contig8310.8.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8310.8.1
Unique Nameprot_A-nodosum_M_contig8310.8.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length336
Homology
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BLAST of mRNA_A-nodosum_M_contig8310.8.1 vs. uniprot
Match: D7G8J6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.780e-28
Identity = 112/343 (32.65%), Postives = 161/343 (46.94%), Query Frame = 0 
Query:   21 RATRKVSPIPITALAFRHV----ADPSD-TIIQSAPGKANGASTQEGEN---CIDR--SLLSV---------ELPPRSATRAPS---PPKMRSTLYTGDELGSIKVWDMTGVLLDELGSTTCSARSTVDKATIPPAAGDRNPQEDFYHRQGPLDGVTMQAALRFRELMEIAKTLRGADCAPSI-TQTPGVGNKKSPYCSNTVNSANVSEGE---RNPQPVFATPSTKELATNIPGEGARA---GAILRRRQD---------NGADEDGLETNNENIPRSPAAVANEAEIQ--DTGQKVTTSDQVEAVLNATVDTVEPMVSWTGHTDTVTFIQVIWSTLSPPCI 323
            R  R+V P P+T +AFRH     +DP+D    + A  K   A  +E  +   C D+  S+            + PP +    P+   P ++ S L+TGDELGSIKVWD+T VLLD+LG   C    T DKA  PP++         ++RQGPLDGV + AA RFREL++I + LR  D   S  T+  G  + +         S +V  G    R P P  A  S    + +      R+       RR+Q           G  E G    + +   S  +V +  + Q    G K     Q EA LNA  D ++P+ SW GH D++T +Q++    +PPC+
Sbjct:  664 RRARQVLPTPVTCMAFRHHTAADSDPADIATARRATKKPVVARRKESTSVTGCGDKEGSIRQAPQPLPGQGGDTPPTTEINMPTTATPWEVGSILFTGDELGSIKVWDLTAVLLDKLGPAACGVDGTEDKAAFPPSSFGAASHHFVHYRQGPLDGVGLHAAKRFRELIDIGRVLRRGDHLHSEKTEPDGSRDARPRRAGLDEESGSVRGGRVRARRPPPAGAKSSADSSSLSAGSTAGRSRDRSPTARRKQGLLLGEDSKPRGRGEKGASNPSLSSSLSSRSVPDACDSQRRPAGPKT----QAEATLNARPDDIDPVFSWKGHDDSITSMQIV---STPPCV 999
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8310.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8J6_ECTSI3.780e-2832.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8310contigA-nodosum_M_contig8310:19143..20150 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8310.8.1mRNA_A-nodosum_M_contig8310.8.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8310 19138..22158 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8310.8.1 ID=prot_A-nodosum_M_contig8310.8.1|Name=mRNA_A-nodosum_M_contig8310.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=336bp
MRNSVVVGEAFPSGNPAGAFRATRKVSPIPITALAFRHVADPSDTIIQSA
PGKANGASTQEGENCIDRSLLSVELPPRSATRAPSPPKMRSTLYTGDELG
SIKVWDMTGVLLDELGSTTCSARSTVDKATIPPAAGDRNPQEDFYHRQGP
LDGVTMQAALRFRELMEIAKTLRGADCAPSITQTPGVGNKKSPYCSNTVN
SANVSEGERNPQPVFATPSTKELATNIPGEGARAGAILRRRQDNGADEDG
LETNNENIPRSPAAVANEAEIQDTGQKVTTSDQVEAVLNATVDTVEPMVS
WTGHTDTVTFIQVIWSTLSPPCIQNDRSSIDVLCV*
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