mRNA_A-nodosum_M_contig8310.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8310.8.1
Unique NamemRNA_A-nodosum_M_contig8310.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8310.8.1 vs. uniprot
Match: D7G8J6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.880e-25
Identity = 112/343 (32.65%), Postives = 161/343 (46.94%), Query Frame = 3 
Query:   66 RATRKVSPIPITALAFRHV----ADPSD-TIIQSAPGKANGASTQEGEN---CIDR--SLLSV---------ELPPRSATRAPS---PPKMRSTLYTGDELGSIKVWDMTGVLLDELGSTTCSARSTVDKATIPPAAGDRNPQEDFYHRQGPLDGVTMQAALRFRELMEIAKTLRGADCAPSI-TQTPGVGNKKSPYCSNTVNSANVSEGE---RNPQPVFATPSTKELATNIPGEGARA---GAILRRRQD---------NGADEDGLETNNENIPRSPAAVANEAEIQ--DTGQKVTTSDQVEAVLNATVDTVEPMVSWTGHTDTVTFIQVIWSTLSPPCI 974
            R  R+V P P+T +AFRH     +DP+D    + A  K   A  +E  +   C D+  S+            + PP +    P+   P ++ S L+TGDELGSIKVWD+T VLLD+LG   C    T DKA  PP++         ++RQGPLDGV + AA RFREL++I + LR  D   S  T+  G  + +         S +V  G    R P P  A  S    + +      R+       RR+Q           G  E G    + +   S  +V +  + Q    G K     Q EA LNA  D ++P+ SW GH D++T +Q++    +PPC+
Sbjct:  664 RRARQVLPTPVTCMAFRHHTAADSDPADIATARRATKKPVVARRKESTSVTGCGDKEGSIRQAPQPLPGQGGDTPPTTEINMPTTATPWEVGSILFTGDELGSIKVWDLTAVLLDKLGPAACGVDGTEDKAAFPPSSFGAASHHFVHYRQGPLDGVGLHAAKRFRELIDIGRVLRRGDHLHSEKTEPDGSRDARPRRAGLDEESGSVRGGRVRARRPPPAGAKSSADSSSLSAGSTAGRSRDRSPTARRKQGLLLGEDSKPRGRGEKGASNPSLSSSLSSRSVPDACDSQRRPAGPKT----QAEATLNARPDDIDPVFSWKGHDDSITSMQIV---STPPCV 999
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8310.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8J6_ECTSI1.880e-2532.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8310contigA-nodosum_M_contig8310:19138..22158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8J6
PFAMsAnk_2,NACHT,Utp13,WD40
Model size3021
Max annot lvl2759|Eukaryota
KEGG koko:K14555
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.2e-29
EggNOG OGsKOG0319@1|root,KOG0319@2759|Eukaryota
DescriptionTransducin beta-like protein 3
Cds size1008
COG categoryT
BRITEko00000,ko00001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870179.9572382-UTR-A-nodosum_M_contig8310:19137..191421680870179.9572382-UTR-A-nodosum_M_contig8310:19137..19142Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8310 19138..19142 +
1680870179.982419-UTR-A-nodosum_M_contig8310:20150..221581680870179.982419-UTR-A-nodosum_M_contig8310:20150..22158Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8310 20151..22158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870179.971671-CDS-A-nodosum_M_contig8310:19142..201501680870179.971671-CDS-A-nodosum_M_contig8310:19142..20150Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8310 19143..20150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8310.8.1prot_A-nodosum_M_contig8310.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8310 19143..20150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8310.8.1

>prot_A-nodosum_M_contig8310.8.1 ID=prot_A-nodosum_M_contig8310.8.1|Name=mRNA_A-nodosum_M_contig8310.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=336bp
MRNSVVVGEAFPSGNPAGAFRATRKVSPIPITALAFRHVADPSDTIIQSA
PGKANGASTQEGENCIDRSLLSVELPPRSATRAPSPPKMRSTLYTGDELG
SIKVWDMTGVLLDELGSTTCSARSTVDKATIPPAAGDRNPQEDFYHRQGP
LDGVTMQAALRFRELMEIAKTLRGADCAPSITQTPGVGNKKSPYCSNTVN
SANVSEGERNPQPVFATPSTKELATNIPGEGARAGAILRRRQDNGADEDG
LETNNENIPRSPAAVANEAEIQDTGQKVTTSDQVEAVLNATVDTVEPMVS
WTGHTDTVTFIQVIWSTLSPPCIQNDRSSIDVLCV*
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mRNA from alignment at A-nodosum_M_contig8310:19138..22158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8310.8.1 ID=mRNA_A-nodosum_M_contig8310.8.1|Name=mRNA_A-nodosum_M_contig8310.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3021bp|location=Sequence derived from alignment at A-nodosum_M_contig8310:19138..22158+ (Ascophyllum nodosum dioecious)
CGACGATGCGGAACAGCGTTGTCGTTGGAGAGGCGTTTCCCAGCGGAAAC
CCGGCGGGGGCTTTCAGAGCCACGCGCAAGGTGTCGCCCATACCGATTAC
CGCGCTTGCGTTTCGTCACGTGGCTGATCCTTCTGATACGATCATTCAAA
GTGCGCCTGGAAAGGCGAATGGGGCCAGTACACAAGAAGGGGAAAATTGC
ATAGATAGATCGCTTTTATCAGTGGAACTACCCCCTAGATCGGCAACCCG
AGCTCCTTCACCCCCCAAAATGCGCAGTACGTTGTATACTGGTGACGAGC
TTGGATCGATCAAGGTTTGGGACATGACGGGCGTCCTGCTTGATGAGCTC
GGTTCCACCACATGCAGCGCAAGATCTACCGTGGATAAGGCCACGATCCC
GCCGGCAGCGGGTGATAGAAACCCCCAAGAAGATTTCTATCACCGCCAAG
GCCCGCTTGACGGAGTAACAATGCAAGCCGCTCTCCGATTCAGGGAACTG
ATGGAAATTGCAAAGACCTTGCGTGGGGCGGACTGCGCGCCATCGATAAC
GCAAACACCTGGCGTAGGCAACAAGAAAAGTCCTTATTGTAGCAATACAG
TGAACTCGGCTAATGTCTCAGAGGGGGAAAGGAATCCTCAACCAGTCTTT
GCAACCCCCTCTACTAAGGAGTTGGCCACGAACATTCCAGGAGAAGGAGC
ACGCGCCGGCGCGATCTTGCGACGGAGGCAAGACAACGGCGCCGACGAAG
ACGGGTTGGAGACGAATAATGAAAACATCCCCCGATCACCAGCGGCAGTC
GCCAATGAGGCCGAAATACAAGACACCGGGCAGAAAGTAACTACTAGCGA
TCAAGTTGAGGCGGTACTAAACGCTACGGTGGACACGGTCGAACCTATGG
TATCTTGGACCGGTCACACCGACACCGTCACCTTCATACAGGTTATTTGG
AGCACGTTAAGCCCCCCGTGTATACAAAATGATCGCAGCTCGATAGATGT
TCTCTGCGTTTAAGTGCCCGATCTTCCCTTGGCCGCAAAAAGGGTGTTGA
ATGCGTTGAAGTTGACCCTGAAACTGGAGGCTTGGAGACTGCCGCCATCA
ACTCTTTGCTGGCGCTATAAAGTCGACCCATACCTCCTCTTTGACGGAGC
ACATTTTGATCCAAGGGCAAACGCTCGTTAGTTGTCCCCTGCGGTATTCT
TCGGGCTATGCAACCCTTTCAACCGTTTCGATGCTGATATGAACGCTGCA
CTCAAGTACGTCCCCACGGCCTTTCCACCCTTGCATTTTACCCCTCGTAC
AAGGTCATTGTTAGCCCTCCTTCGCTGCTGACGGGATCACTTGATGCCTC
CGTACGCATCTTTGCTTTGGACGGGTCGCTCCTCGGAATAGTAATCGACA
AGGACGAGCGGCCTGGCTCAGTGCCCTGGCTCTTCCGACCCCCAGTAATC
GGTCAAGAAGTCGAAGCAAGAAATCGAGCCACAGGTCTCAAGGAGAAGCT
GAGAAGCTTGCGTCGAACTCAGGGGGGCGCAGCCCATCATGGGTTATTTG
GCAAACCGGTTTCAGCAGGATCAAAAGACCAGGCAGGGGAGATAGCGTGG
GTGCGCGTTGCCTCCAGGGACGAGGAGGCCGCTAGTGGCTCTGCAGAACT
ACCGTCTCTTGCAGCATCGGCTCACCATCCGGGTGATCTAATGTTCGTCA
AATCGGAGGCAAAGTCGCTGTCGGCGACACCCGCGTTTAGGGCATCTGTG
GAAGAAGGGGAGACTGAGCCCGACAGGGAGAGTTTGGACAAGGATTCGCC
AATACCCGCCACACGTCTGTTTAGGATCAAAGAGGTCACGCAGGTGTCCT
GGGTGACCGTGAGGCCCAAAGAATCCGAAATAGAGGCCCCCTGCCAGGAG
AGCATCAACGCTAGGCTGAAGGCCGAAATCCAGGAGGGGCAGAGATACCG
GGCACACGGTGAGCGCCAGACGTCATCGTCTTCGAACAAGGGAGGGCGAG
GCCAGCTTAGCGACAAAACCGTTAGAAAATCAGCGACAGGCACCAGGAAG
CATCTCCCTGACCCCCGAACGATTGCTCCAAACCTCTACATGGAACATCA
TAGGAAAGACATAAAAAGAACACGGTCCGAGTTAGAGTTTTTATCGAATA
CTATTGGTCAAACAATGAGGCCCTCAAGCGCTTTGACACGTTTGCGGCCG
TCCACCGCTTGCGGTTCAAGAGACAGAGCCGCAAGGACGCGAGATAGACT
CTCACCGAAAAAGGTGACTGACCTTGGCAGGCCGCGCACGGCGCCGTGCG
CTCGGATCAAAAATACATCAGGCCGGTTGCAAAGCGACGAGCTGCGACGA
GATTCTACAGCAGCAGTACGCATGGAGGCAGGCTCATCTGCACCTGACCT
TCAGCATGCGTGGACCACGTTAGCACCGATGACGGCGTCGCGACTTAGGG
AGGGCGCGACTTAGGGAGGCGTCGTCAGCATCCACGAGATTGGCCATGCG
CAGGCAACTTCTGAAGGCATGTACATATAATAGGGTAAAAACACCACAGT
ACCACAGTACCACAGTCGACAGTGCAGGGGCGAGGGGAAGCAAGGACAAG
GTTTCAGTGCTCGTGCCAATGCCTTCAAACCTTTACAAACCTTGGTAGTA
GCTGTAGAAGCCGAGAAGAGTTTCGTTTGTTCCGTGACGGCTTCAAATTT
CCTTATTAATAAGGGTCGTACTGTTATGTTTACAATATAGCTGCGGTTAA
AAGCCGTTATGATTAGGGTGGGTCAGACGTAACATTTTGCCTTCTACGTA
GCAGTAGCTGGAGATGATGGGGATGATGTAGTGTTACCTAAAAAAACATC
GGAAATAAGTCCAAGCGGTGTTTCGGCACGGTCGGAGGGAGTATCTGGAG
AAAATCCGACTTTCCCTCCCACACGGTTCAGGCTGGTCACCGTCACCGCC
ACCGTCGACAGCGTCGGTTGCATAGCACAGGCTGACTCGTCTTTTCTGGG
TCTAGTAACAGTCAACCTCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8310:19138..22158+

>mRNA_A-nodosum_M_contig8310.8.1 ID=mRNA_A-nodosum_M_contig8310.8.1|Name=mRNA_A-nodosum_M_contig8310.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at A-nodosum_M_contig8310:19138..22158+ (Ascophyllum nodosum dioecious)
ATGCGGAACAGCGTTGTCGTTGGAGAGGCGTTTCCCAGCGGAAACCCGGC
GGGGGCTTTCAGAGCCACGCGCAAGGTGTCGCCCATACCGATTACCGCGC
TTGCGTTTCGTCACGTGGCTGATCCTTCTGATACGATCATTCAAAGTGCG
CCTGGAAAGGCGAATGGGGCCAGTACACAAGAAGGGGAAAATTGCATAGA
TAGATCGCTTTTATCAGTGGAACTACCCCCTAGATCGGCAACCCGAGCTC
CTTCACCCCCCAAAATGCGCAGTACGTTGTATACTGGTGACGAGCTTGGA
TCGATCAAGGTTTGGGACATGACGGGCGTCCTGCTTGATGAGCTCGGTTC
CACCACATGCAGCGCAAGATCTACCGTGGATAAGGCCACGATCCCGCCGG
CAGCGGGTGATAGAAACCCCCAAGAAGATTTCTATCACCGCCAAGGCCCG
CTTGACGGAGTAACAATGCAAGCCGCTCTCCGATTCAGGGAACTGATGGA
AATTGCAAAGACCTTGCGTGGGGCGGACTGCGCGCCATCGATAACGCAAA
CACCTGGCGTAGGCAACAAGAAAAGTCCTTATTGTAGCAATACAGTGAAC
TCGGCTAATGTCTCAGAGGGGGAAAGGAATCCTCAACCAGTCTTTGCAAC
CCCCTCTACTAAGGAGTTGGCCACGAACATTCCAGGAGAAGGAGCACGCG
CCGGCGCGATCTTGCGACGGAGGCAAGACAACGGCGCCGACGAAGACGGG
TTGGAGACGAATAATGAAAACATCCCCCGATCACCAGCGGCAGTCGCCAA
TGAGGCCGAAATACAAGACACCGGGCAGAAAGTAACTACTAGCGATCAAG
TTGAGGCGGTACTAAACGCTACGGTGGACACGGTCGAACCTATGGTATCT
TGGACCGGTCACACCGACACCGTCACCTTCATACAGGTTATTTGGAGCAC
GTTAAGCCCCCCGTGTATACAAAATGATCGCAGCTCGATAGATGTTCTCT
GCGTTTAA
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