prot_A-nodosum_M_contig83.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig83.5.1
Unique Nameprot_A-nodosum_M_contig83.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length346
Homology
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BLAST of mRNA_A-nodosum_M_contig83.5.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.140e-5
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0 
Query:    4 SRNRRCSSDDCDKYPSYGVAGTRKRAYCAQHAPDGMVNV 42
            SR  +C  ++C K P+YGVAG++KR +C+QHA DGMVNV
Sbjct:   59 SRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNV 97
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE4.140e-558.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.110coord: 26..88
e-value: 1.0E-7
score: 34.1
coord: 255..318
e-value: 5.6E-9
score: 38.1
coord: 99..164
e-value: 1.8E-9
score: 39.8
coord: 178..239
e-value: 2.0E-9
score: 39.6
IPR043822EsV-1-7 cysteine-rich motifPFAMPF19114EsV_1_7_cyscoord: 9..42
e-value: 4.5E-9
score: 36.7
coord: 86..118
e-value: 5.0E-9
score: 36.5
coord: 239..271
e-value: 6.9E-9
score: 36.1
coord: 47..81
e-value: 9.9E-7
score: 29.2
coord: 315..346
e-value: 4.9E-4
score: 20.6
coord: 277..310
e-value: 9.3E-9
score: 35.7
coord: 124..157
e-value: 4.3E-9
score: 36.7
coord: 162..196
e-value: 2.2E-8
score: 34.5
coord: 200..234
e-value: 2.5E-5
score: 24.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:27404..28441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.5.1mRNA_A-nodosum_M_contig83.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig83 27007..28441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig83.5.1 ID=prot_A-nodosum_M_contig83.5.1|Name=mRNA_A-nodosum_M_contig83.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp
MVNSRNRRCSSDDCDKYPSYGVAGTRKRAYCAQHAPDGMVNVCGLRCRTE
GCNKHPSFGVAGTRPKDYCARHAPDRMINVKSKKSCAHEDCDKTPSFGVA
GTSKPEYCAQHAPDGMVNSRNRRCLSDGCNKHPSYGLTGTRTRAYCAQHA
PDGMVNLCSLRCRTEGCDKQPSFGMPGTKTVEYCAQHAANGMVNVRNRKC
KTEGCGKIPSFGVAGTKTKDYCAQHASDRMINVKSKKSCAHEDCDKTPSF
GVAGTRKPEYCAQHAPDGMVNSMNRRCLSDGCDKHPSFGVAGTRKRAYCA
QHAPDGMVNLCSLRCRTEGCDKRSLFGVAGTRKAEYCAQHAADGMV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043822EsV_1_7_cys