mRNA_A-nodosum_M_contig83.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig83.5.1
Unique NamemRNA_A-nodosum_M_contig83.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:27007..28441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1436
Hectar predicted targeting categoryother localisation
Exons1
Cds size1038
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870169.0451453-UTR-A-nodosum_M_contig83:27006..274031680870169.0451453-UTR-A-nodosum_M_contig83:27006..27403Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig83 27007..27403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870169.05759-CDS-A-nodosum_M_contig83:27403..284411680870169.05759-CDS-A-nodosum_M_contig83:27403..28441Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 27404..28441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.5.1prot_A-nodosum_M_contig83.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig83 27404..28441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig83.5.1

>prot_A-nodosum_M_contig83.5.1 ID=prot_A-nodosum_M_contig83.5.1|Name=mRNA_A-nodosum_M_contig83.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp
MVNSRNRRCSSDDCDKYPSYGVAGTRKRAYCAQHAPDGMVNVCGLRCRTE
GCNKHPSFGVAGTRPKDYCARHAPDRMINVKSKKSCAHEDCDKTPSFGVA
GTSKPEYCAQHAPDGMVNSRNRRCLSDGCNKHPSYGLTGTRTRAYCAQHA
PDGMVNLCSLRCRTEGCDKQPSFGMPGTKTVEYCAQHAANGMVNVRNRKC
KTEGCGKIPSFGVAGTKTKDYCAQHASDRMINVKSKKSCAHEDCDKTPSF
GVAGTRKPEYCAQHAPDGMVNSMNRRCLSDGCDKHPSFGVAGTRKRAYCA
QHAPDGMVNLCSLRCRTEGCDKRSLFGVAGTRKAEYCAQHAADGMV
back to top

mRNA from alignment at A-nodosum_M_contig83:27007..28441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig83.5.1 ID=mRNA_A-nodosum_M_contig83.5.1|Name=mRNA_A-nodosum_M_contig83.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1435bp|location=Sequence derived from alignment at A-nodosum_M_contig83:27007..28441+ (Ascophyllum nodosum dioecious)
CCATAACTGGGGGATGCTCAGAAGGTCTAGGTGTGGTCTGATTTTTCTTT
AAACATCCCAGAGGGATGGCCTACGTCCCCGGTGGAAAGTGTAGAACCGA
AGGCTGCGGGAGGCCTCCGTCATTCGTAGTGGCCGGCACAAAAATGCGGG
ACAATTGCACACAAAACGCCCCGGCCGGGATGGTCAACCTCAAAAAGTGC
AAAACCGAAGGCTTCGGCAAGTTTTCGAGCGAGAACGGGAACGAGGACAC
CGAAGTACTGCGCAAAGCACGCCCCGGCGTAGATTATTAACGTCAACAGC
AAAAAGTGTTTCATCGAAGGCTGCGACAAGGTCCCGTCGCTCGGATTCGC
CGGCACGAAAGCATCGAAGTACTACTGTGCACAGCACGCCCCCAGAGATG
GTGAACTCTAGGAACCGAAGGTGCTCAAGCGATGACTGCGACAAGTATCC
CTCCTACGGAGTGGCCGGTACAAGAAAACGGGCCTACTGCGCACAGCACG
CCCCGGACGGAATGGTAAACGTATGTGGCCTAAGATGCAGAACCGAAGGC
TGCAACAAGCATCCGTCGTTCGGAGTGGCCGGCACGAGACCTAAGGACTA
CTGCGCACGACACGCCCCGGACAGGATGATCAACGTCAAGAGTAAGAAGA
GTTGTGCCCACGAAGATTGCGACAAGACTCCGTCGTTCGGAGTGGCCGGT
ACTAGTAAGCCAGAATATTGCGCACAGCACGCCCCGGACGGGATGGTGAA
CTCTAGAAACAGAAGGTGCTTAAGCGATGGCTGCAACAAGCATCCGTCCT
ACGGATTGACTGGTACGAGAACACGGGCCTACTGCGCACAGCACGCCCCG
GACGGGATGGTAAACCTATGTAGCCTAAGATGCAGAACCGAAGGCTGCGA
TAAGCAGCCGTCGTTCGGAATGCCCGGAACAAAAACTGTTGAATACTGTG
CGCAACATGCTGCGAACGGGATGGTGAACGTCCGCAACAGAAAGTGCAAA
ACCGAAGGCTGCGGCAAGATTCCGTCGTTCGGAGTGGCCGGCACGAAAAC
TAAGGACTACTGCGCACAGCACGCCTCGGACAGGATGATCAACGTCAAGA
GCAAGAAGAGTTGTGCCCACGAAGACTGCGACAAGACTCCGTCGTTCGGA
GTGGCCGGCACGAGAAAGCCAGAATACTGCGCACAGCACGCCCCGGACGG
GATGGTGAACTCTATGAACAGAAGGTGCTTAAGCGATGGCTGCGACAAGC
ATCCGTCGTTCGGAGTGGCCGGTACGAGAAAACGGGCCTACTGCGCACAG
CACGCCCCAGACGGTATGGTAAACCTATGTAGCCTAAGATGCAGAACCGA
AGGCTGCGACAAGCGATCGTTGTTCGGAGTTGCCGGCACGAGAAAGGCGG
AGTACTGTGCGCAACACGCCGCGGACGGCATGGTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig83:27007..28441+

>mRNA_A-nodosum_M_contig83.5.1 ID=mRNA_A-nodosum_M_contig83.5.1|Name=mRNA_A-nodosum_M_contig83.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at A-nodosum_M_contig83:27007..28441+ (Ascophyllum nodosum dioecious)
ATGGTGAACTCTAGGAACCGAAGGTGCTCAAGCGATGACTGCGACAAGTA
TCCCTCCTACGGAGTGGCCGGTACAAGAAAACGGGCCTACTGCGCACAGC
ACGCCCCGGACGGAATGGTAAACGTATGTGGCCTAAGATGCAGAACCGAA
GGCTGCAACAAGCATCCGTCGTTCGGAGTGGCCGGCACGAGACCTAAGGA
CTACTGCGCACGACACGCCCCGGACAGGATGATCAACGTCAAGAGTAAGA
AGAGTTGTGCCCACGAAGATTGCGACAAGACTCCGTCGTTCGGAGTGGCC
GGTACTAGTAAGCCAGAATATTGCGCACAGCACGCCCCGGACGGGATGGT
GAACTCTAGAAACAGAAGGTGCTTAAGCGATGGCTGCAACAAGCATCCGT
CCTACGGATTGACTGGTACGAGAACACGGGCCTACTGCGCACAGCACGCC
CCGGACGGGATGGTAAACCTATGTAGCCTAAGATGCAGAACCGAAGGCTG
CGATAAGCAGCCGTCGTTCGGAATGCCCGGAACAAAAACTGTTGAATACT
GTGCGCAACATGCTGCGAACGGGATGGTGAACGTCCGCAACAGAAAGTGC
AAAACCGAAGGCTGCGGCAAGATTCCGTCGTTCGGAGTGGCCGGCACGAA
AACTAAGGACTACTGCGCACAGCACGCCTCGGACAGGATGATCAACGTCA
AGAGCAAGAAGAGTTGTGCCCACGAAGACTGCGACAAGACTCCGTCGTTC
GGAGTGGCCGGCACGAGAAAGCCAGAATACTGCGCACAGCACGCCCCGGA
CGGGATGGTGAACTCTATGAACAGAAGGTGCTTAAGCGATGGCTGCGACA
AGCATCCGTCGTTCGGAGTGGCCGGTACGAGAAAACGGGCCTACTGCGCA
CAGCACGCCCCAGACGGTATGGTAAACCTATGTAGCCTAAGATGCAGAAC
CGAAGGCTGCGACAAGCGATCGTTGTTCGGAGTTGCCGGCACGAGAAAGG
CGGAGTACTGTGCGCAACACGCCGCGGACGGCATGGTG
back to top