prot_A-nodosum_M_contig823.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig823.16.1
Unique Nameprot_A-nodosum_M_contig823.16.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length109
Homology
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: A0A835ZMS4_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMS4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.460e-53
Identity = 83/98 (84.69%), Postives = 93/98 (94.90%), Query Frame = 0
Query:   11 DEEREEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNPS 108
            D+EREEEF+SGPLSLLMQSVKNN QVLINVRNNHKLLARVKAFDRHCNMVLTDVKE+WT+ PK GKG+KKA  V+KDRY+SKMFLRGDSV+LVL+NP+
Sbjct:   11 DKEREEEFASGPLSLLMQSVKNNNQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEMWTDVPKKGKGQKKAHPVNKDRYVSKMFLRGDSVILVLKNPN 108          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.970e-53
Identity = 84/108 (77.78%), Postives = 97/108 (89.81%), Query Frame = 0
Query:    1 MSAEDRIKGPDEEREEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNPS 108
            MS  D+   P+ E ++EF++GPLS+LMQSVK NTQVLINVRNNHKLLARVKAFDRHCNMVL +VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVL+NP+
Sbjct:    1 MSLADKQGMPEGENKDEFNTGPLSILMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNPN 108          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: A0A7S2GCZ6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCZ6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.530e-50
Identity = 78/100 (78.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:    9 GPDEEREEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNPS 108
            GP+ ++E+EF++GPLS+LM SVKNNTQVLINVRNNHKLLARVKAFDRHCNMVL +VKE+WT+ PK+GKG KK+K V+K+RYISKMFLRGDSV+LVL+NPS
Sbjct:   12 GPEGDKEQEFATGPLSVLMHSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTDVPKSGKGAKKSKPVNKERYISKMFLRGDSVILVLKNPS 111          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: A0A6A4WKZ7_AMPAM (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bilateria TaxID=33213 RepID=A0A6A4WKZ7_AMPAM)

HSP 1 Score: 161 bits (408), Expect = 2.220e-49
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 0
Query:   15 EEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNP 107
            EEEF++GPLS+L QSVKNNTQVLIN RNN KLLARVKAFDRHCNMVL +VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   20 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: C1BS97_LEPSM (Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Protostomia TaxID=33317 RepID=C1BS97_LEPSM)

HSP 1 Score: 160 bits (405), Expect = 5.610e-49
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0
Query:   15 EEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNP 107
            EEEF++GPLS+L QSVKNNTQVLIN RNN KLL RVKAFDRHCNMVL  VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   20 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: A0A2K1JZF8_PHYPA (Small nuclear ribonucleoprotein Sm D2 n=11 Tax=Embryophyta TaxID=3193 RepID=A0A2K1JZF8_PHYPA)

HSP 1 Score: 159 bits (402), Expect = 1.290e-48
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 0
Query:    1 MSAEDRIKGPDEEREEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNP 107
            MSA    +  ++  EEEFS+GPLS+L  SVKNNTQVLIN RNN KLL RVKAFDRHCNMVL +VKE+WTE PKTGKGKKKAK V+KDR+ISKMFLRGDSV++VLRNP
Sbjct:    1 MSARPMEEDTEKTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNP 107          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: A0A2T7P031_POMCA (Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mollusca TaxID=6447 RepID=A0A2T7P031_POMCA)

HSP 1 Score: 159 bits (402), Expect = 1.610e-48
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 0
Query:   15 EEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNP 107
            +EEF++GPLS+L QSVKNNTQVLIN RNN KLLARVKAFDRHCNMVL +VKE+WTE PKTGKGKKK+K V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   18 QEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 110          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: F0XYE5_AURAN (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYE5_AURAN)

HSP 1 Score: 159 bits (401), Expect = 1.620e-48
Identity = 76/94 (80.85%), Postives = 89/94 (94.68%), Query Frame = 0
Query:   15 EEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNPS 108
            E EF++GPLSLL+ S+K+N+QVLINVRNNHKLLARVKAFDRHCNMVL +VKE+WTE PKTGKGKKK+K V+K+RYISKMFLRGDSV+LVLRNP+
Sbjct:    9 ENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNPN 102          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.680e-48
Identity = 76/82 (92.68%), Postives = 82/82 (100.00%), Query Frame = 0
Query:   27 MQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNPS 108
            MQSVKNNTQVLINVRNNHKLLAR+KAFDRHCNMVLTDVKE+WTEQPKTGKG+KKAKAV+KDRY+SKMFLRGDSVVLVLRNP+
Sbjct:    1 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 82          
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Match: C3XTF6_BRAFL (Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bilateria TaxID=33213 RepID=C3XTF6_BRAFL)

HSP 1 Score: 159 bits (401), Expect = 2.360e-48
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 0
Query:   15 EEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSVVLVLRNP 107
            +EEF++GPLS+L QSVKNNTQVLIN RNN KLLARVKAFDRHCNMVL +VKE+WTE PKTGKGKKK+K ++KDRYISKMFLRGDSV+LVLRNP
Sbjct:   18 QEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPINKDRYISKMFLRGDSVILVLRNP 110          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig823.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZMS4_9STRA3.460e-5384.69Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Trib... [more]
A0A7S2XVF6_9STRA6.970e-5377.78Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibr... [more]
A0A7S2GCZ6_9STRA1.530e-5078.00Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Flor... [more]
A0A6A4WKZ7_AMPAM2.220e-4986.02Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bila... [more]
C1BS97_LEPSM5.610e-4984.95Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Prot... [more]
A0A2K1JZF8_PHYPA1.290e-4874.77Small nuclear ribonucleoprotein Sm D2 n=11 Tax=Emb... [more]
A0A2T7P031_POMCA1.610e-4883.87Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mol... [more]
F0XYE5_AURAN1.620e-4880.85Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aure... [more]
D7FW42_ECTSI1.680e-4892.68Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ecto... [more]
C3XTF6_BRAFL2.360e-4882.80Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bila... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 26..105
e-value: 1.0E-17
score: 74.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 31..103
e-value: 4.3E-18
score: 64.8
NoneNo IPR availableGENE3D2.30.30.100coord: 16..108
e-value: 2.0E-40
score: 138.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 11..107
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 18..107
e-value: 2.05934E-50
score: 152.485
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 21..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig823contigA-nodosum_M_contig823:142880..151525 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig823.16.1mRNA_A-nodosum_M_contig823.16.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig823 142456..152181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig823.16.1 ID=prot_A-nodosum_M_contig823.16.1|Name=mRNA_A-nodosum_M_contig823.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MSAEDRIKGPDEEREEEFSSGPLSLLMQSVKNNTQVLINVRNNHKLLARV
KAFDRHCNMVLTDVKEIWTEQPKTGKGKKKAKAVDKDRYISKMFLRGDSV
VLVLRNPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027248Sm_D2
IPR010920LSM_dom_sf