prot_A-nodosum_M_contig821.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig821.4.1
Unique Nameprot_A-nodosum_M_contig821.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length519
Homology
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BLAST of mRNA_A-nodosum_M_contig821.4.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 3.520e-111
Identity = 213/396 (53.79%), Postives = 256/396 (64.65%), Query Frame = 0 
Query:  143 GAGTGETEFYXXXXXXXXXEVRVTLPPGTPAKKVRLSVTKSSVALELEGREGPVLKGTLKGQVQADLSHWTMEEKEGTREKVLYLCLEKFIDIEALERNGMPTDWSGVLQGEEVVKVYYPDKDKNFDVNEYVKRMGYDRDRDIDKVDKAMFSGLTEEMKQNLAENLPGSSYTEKDDMIPVVSDPKVAPVIDTGVLGVQAAASSLEPERESLENASCVDDG---DDRGRASPVSGGRVDPGGQQRVAGVDVDGS--------SEMSP-------DLTTT---GEASRPPRELTARQREISAGLSDTYERLLRSGMLGR-NPDATPVDMPDMDELAREYEQNGFMPKDGDFPEADLSNHA-----MAMMSSGLDEDGATASG-LDLNDPAVRAAFDLE 510
            G GTG+TE+Y         EVRV LPPGT AK V+LSVTK+S+ L L+GREGPVLKG+LKGQV AD SHWTMEE E T EKVLYLCLEK  D+EAL  N MP DW GVL+GEE + VYYPDKDK+FDV EYVKRMGYDR+RDI KVDKAMFS LT EMK+NL   LP SS+T+KDDMIPV++DPKV+PVIDTGVLG+       EPE    E  +   DG   +  G A+ +    V  G  +     D+ G+        S  SP       D       GEA     ELT RQRE++AGL  TYE+L+++GM+   NPD TP  MPDM+E+AR YE  GFM K+GDF E +LS +           +GL  D     G +DL+DPA R+AF L+
Sbjct:  205 GGGTGDTEYYSWTETDSDMEVRVPLPPGTAAKSVQLSVTKTSLTLGLKGREGPVLKGSLKGQVHADESHWTMEEMEDTGEKVLYLCLEKVADMEALAANSMPQDWVGVLEGEEPLNVYYPDKDKDFDVGEYVKRMGYDRERDIGKVDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVIDTGVLGLPTPPPR-EPEAVPDETVNVNADGTVSNGGGGAAAIDAEVVREGSWEAGFAPDLGGAAAGGGPDDSAYSPAGFRADADFNVPMKDGEAG----ELTERQREVAAGLRRTYEKLVKTGMVQETNPDGTPAKMPDMEEMARAYETEGFMFKEGDFSEEELSKYMDMXXXXXXXXAGLALDDDLPGGDIDLDDPATRSAFGLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig821.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA9_ECTSI3.520e-11153.79CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 152..217
e-value: 8.8E-9
score: 36.2
IPR007052CS domainPROSITEPS51203CScoord: 147..251
score: 11.522675
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 145..276
e-value: 4.9E-17
score: 64.1
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 147..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..412
NoneNo IPR availableCDDcd06467p23_NUDC_likecoord: 152..251
e-value: 6.87766E-17
score: 73.7358
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 144..288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig821contigA-nodosum_M_contig821:67983..72970 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig821.4.1mRNA_A-nodosum_M_contig821.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig821 67972..73211 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig821.4.1 ID=prot_A-nodosum_M_contig821.4.1|Name=mRNA_A-nodosum_M_contig821.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=519bp
MLALALAVAFSSFTASTRPASNHYRTPSSALDRRVTGERNKPNTVAGRMP
RGAPAWTGRSHPSTPTGFVSAKAVARAATQRRSWRRGLALGTGKRGCVLG
TRMVGTWWDETDPKQGRGWCGGLRRVRGVNRHEPEGRSLVVVGAGTGETE
FYSWTETDTDMEVRVTLPPGTPAKKVRLSVTKSSVALELEGREGPVLKGT
LKGQVQADLSHWTMEEKEGTREKVLYLCLEKFIDIEALERNGMPTDWSGV
LQGEEVVKVYYPDKDKNFDVNEYVKRMGYDRDRDIDKVDKAMFSGLTEEM
KQNLAENLPGSSYTEKDDMIPVVSDPKVAPVIDTGVLGVQAAASSLEPER
ESLENASCVDDGDDRGRASPVSGGRVDPGGQQRVAGVDVDGSSEMSPDLT
TTGEASRPPRELTARQREISAGLSDTYERLLRSGMLGRNPDATPVDMPDM
DELAREYEQNGFMPKDGDFPEADLSNHAMAMMSSGLDEDGATASGLDLND
PAVRAAFDLEGGREGEGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007052CS_dom
IPR008978HSP20-like_chaperone
IPR037898NudC_fam