prot_A-nodosum_M_contig82.24.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig82.24.2
Unique Nameprot_A-nodosum_M_contig82.24.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length531
Homology
BLAST of mRNA_A-nodosum_M_contig82.24.2 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 2.620e-125
Identity = 241/513 (46.98%), Postives = 281/513 (54.78%), Query Frame = 0
Query:   54 LPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTLFGEISYSFEIVSAHLVRPPKRPT-SKQRDCLRRCPHGKACDCG-GAAGRGQRGG------GVEENDLKIVEEEEERRGTA------------HHAMHMGVNDVATLVLEDNQGITYDFYTFQDEVVAEQMLEKVESFIQEAREGVPAVASSLYATNNINNNNNRGSPSIDQAPLELEVLYDDSWLDEMACALFFLAALVLMTLPYTEVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKLEITEAAVYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRVTS-------PSHPVVNAS--AAVAVEAQGGGVGRGSGLAGGALTPTSDMSPHMSRPR---WNAFSCRASCERRWGCLFGVR----RPLTRCAFGATDSWFLYVDLLFGRKALDNRKLRGPVELVNDLLQRFANDAEGVGGSRGEGTNDGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 530
            +PDN+LEA +G HVEDIDCSLVVRPTRTALDL  FGE+SYSFEIV+A LVRPPKRP  ++   C  +C  GKAC C   +  R +R        G  E  L + E + E                 HH+++MGVNDVATLVLEDNQGITYDFYTFQ                                                                                     VVEFDA +GAMALDRWNLF CGVFRYSCALEN+SK+EITE  VYMMSAHAFEHLRQTKEFGLRVI S+P+   +  +       P++  +N S     +  + G G+   SG  GGA    +        PR   W     R     R G  FG R    RP  R    +T    +Y++LLFG+K LD+R LR PVE+VN+LL RFAND E   G + EG     CCVCFRRRSRVVTFPCMHMATCPQCSESL+ CPLCRA+ISEKHTVFL
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNHDSPARSRRLAEDVEPPGKTEVALSVPEGDGEXXXXXXXXXXXXXGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQ-------------------------------------------------------------------------------------VVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPNNAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVL-STSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDVGEKKEGN----CCVCFRRRSRVVTFPCMHMATCPQCSESLTVCPLCRANISEKHTVFL 423          
BLAST of mRNA_A-nodosum_M_contig82.24.2 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 4.860e-112
Identity = 204/360 (56.67%), Postives = 242/360 (67.22%), Query Frame = 0
Query:  187 TFQDEVVAEQMLEKVESFIQEAREGVPAVASSLYATNNINNNNNRGSPSIDQAPLELEVLYDDSWLDEMACALFFLAALVLMTLPYTEVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKLEITEAAVYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRVTS-------PSHPVVNASAA--VAVEAQGGGVGRGSGLAGGALTPTSDMSPHMSRPR---WNAFSCRASCERRWGCLFGVR----RPLTRCAFGATDSWFLYVDLLFGRKALDNRKLRGPVELVNDLLQRFANDAEGVGGSRGEGTNDGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 530
            T  DE +AE+MLEKV+SFI+EAR+G  + +++L +         +G+   +QAPLELEV YDDSWLDEMAC LF + AL LMT PY EVVEFDA +GAMALDRWNLF CGVFRYSCALEN+SK+EITE  VYMMSAHAFEHLRQTKEFGLRVI S+P+   + T+       PS+  +N S     +  + G G+   SG  GGA          +  PR   W     R     R G  FG R    RP  R    +T    +Y++LLFG+K LD+R LR PVE+VN+LL RFAND E  GG + EG     CCVCFRRRSRVV FPCMHMATCPQCSESL+ CPLCRA+ISEKHTVFL
Sbjct:  269 TVADEALAERMLEKVDSFIREARQGGNSNSNNLSSHGRGAGATEKGTA--EQAPLELEVHYDDSWLDEMACGLFLVIALALMTRPYVEVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVL-STSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDGGEKKEGN----CCVCFRRRSRVVMFPCMHMATCPQCSESLAVCPLCRANISEKHTVFL 621          
BLAST of mRNA_A-nodosum_M_contig82.24.2 vs. uniprot
Match: A0A7S2Y0H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0H0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.580e-33
Identity = 114/368 (30.98%), Postives = 166/368 (45.11%), Query Frame = 0
Query:    1 MKVLQKTKHKVVVRQRRPELLRAVVGCLVVTIIFYLLDARHPKSSLHCARHAVLPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTLFGEISYSFEIVSAHLVRPPKRPTSKQRDCLRRCPHGKACDCGGAAGRGQRGGGVEENDLKIVEEEEERRGTAHHAM---------HMGV---NDVATLVLEDNQGITYDFYTFQDEVVAEQMLEKVESFIQEAREGVPAVASSLYATNNINNNNNRGSPSIDQAPLELEVLYDDSWLDEMACALFFLAALVLMTLPYTEVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKLEITEAAVYMMSA---HAFEHLRQTKEFGLRVILSIPVHTGRVTSPS 353
            MK+L+K  H+VV+     +L  + + C+V T IF LLDA HPK+SL C RH +L D      R +  ED DC L+VR TR+  D+      +YSFE+   ++                                 Q   G+    +K         G A H M         H G    N + ++VLEDN+  TY FYTFQD   A ++ + V  ++  ARE                           +  L L + YDDS++DE A A+F + A++L+     EV  FDA +G   L+R NL       Y+CALEN+S L+I    V+  ++   H   HL + +EF LRV+L  P+   ++   S
Sbjct:    1 MKLLEKQPHRVVLSHTNGKLKYSAILCVVFTFIFLLLDAEHPKASLFCVRHEILVD------RPAAYEDNDCELLVRETRSLWDVVRQNTQAYSFEVAGVNM---------------------------------QVSSGISNYIVKY-------EGNATHVMSLYDVFLQRHHGRYKRNSMFSVVLEDNEDNTYIFYTFQDLETACRVYDHVLRYLLNARE--------------------------QRDRLRLNLDYDDSYMDEAAVAVFAVLAVLLLWKHCKEVAVFDAESGVFRLERSNLVSRPQVLYTCALENISALQIAGDTVFTFTSSRRHTDNHLMERQEFSLRVLLCRPMTADKIIEHS 296          
BLAST of mRNA_A-nodosum_M_contig82.24.2 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.150e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0
Query:   54 LPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTLFGEISYSFEIVSAHLVRPPKRPT-SKQRDCLRRCPHGKACDC 128
            +PDN+LEA +G HVEDIDCSLVVRPTRTALDL  FGE+SYSFEIV+A LVRPPKRP  ++   C  +C  GKAC C
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPC 76          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig82.24.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LC33_ECTSI2.620e-12546.98RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE4.860e-11256.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2Y0H0_9STRA1.580e-3330.98Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5JRV5_9PHAE1.150e-2569.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 481..523
e-value: 1.3E-10
score: 40.9
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 480..525
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 474..530
e-value: 2.5E-13
score: 51.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 484..519
score: 10.202563

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig82contigA-nodosum_M_contig82:212787..253548 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig82.24.2mRNA_A-nodosum_M_contig82.24.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig82 212152..254032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig82.24.2 ID=prot_A-nodosum_M_contig82.24.2|Name=mRNA_A-nodosum_M_contig82.24.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=531bp
MKVLQKTKHKVVVRQRRPELLRAVVGCLVVTIIFYLLDARHPKSSLHCAR
HAVLPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTLFGEISYSFEIVSA
HLVRPPKRPTSKQRDCLRRCPHGKACDCGGAAGRGQRGGGVEENDLKIVE
EEEERRGTAHHAMHMGVNDVATLVLEDNQGITYDFYTFQDEVVAEQMLEK
VESFIQEAREGVPAVASSLYATNNINNNNNRGSPSIDQAPLELEVLYDDS
WLDEMACALFFLAALVLMTLPYTEVVEFDAATGAMALDRWNLFQCGVFRY
SCALENVSKLEITEAAVYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRVT
SPSHPVVNASAAVAVEAQGGGVGRGSGLAGGALTPTSDMSPHMSRPRWNA
FSCRASCERRWGCLFGVRRPLTRCAFGATDSWFLYVDLLFGRKALDNRKL
RGPVELVNDLLQRFANDAEGVGGSRGEGTNDGRCCVCFRRRSRVVTFPCM
HMATCPQCSESLSACPLCRASISEKHTVFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING