prot_A-nodosum_M_contig8182.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8182.1.1
Unique Nameprot_A-nodosum_M_contig8182.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length264
Homology
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BLAST of mRNA_A-nodosum_M_contig8182.1.1 vs. uniprot
Match: D7G889_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G889_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.260e-35
Identity = 71/110 (64.55%), Postives = 81/110 (73.64%), Query Frame = 0 
Query:    3 GVPCGVVVVEERDTRGSSVRRSRRTGTVVYATVHGPGGGRVGNVEKKGVRGAATLELVGDAGTEAYAFQRDRCRIFRSFLGDGKLTVCTEGMRHQIMMSEADHASLKELC 112
            GV CGVVVVEERD RGSS+ RSRRTGT+V+AT  G GGG           G+  ++LVGDAGTE Y FQR RC++FRSF+  GKLTVCT GMRHQIM+SEAD   L ELC
Sbjct:    6 GVVCGVVVVEERDARGSSLGRSRRTGTLVHATPRGTGGGG----------GSVAVDLVGDAGTETYMFQRGRCKLFRSFVHHGKLTVCTAGMRHQIMLSEADPVQLGELC 105
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8182.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G889_ECTSI1.260e-3564.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8182contigA-nodosum_M_contig8182:21846..23066 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8182.1.1mRNA_A-nodosum_M_contig8182.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8182 21846..23066 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8182.1.1 ID=prot_A-nodosum_M_contig8182.1.1|Name=mRNA_A-nodosum_M_contig8182.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=264bp
MDGVPCGVVVVEERDTRGSSVRRSRRTGTVVYATVHGPGGGRVGNVEKKG
VRGAATLELVGDAGTEAYAFQRDRCRIFRSFLGDGKLTVCTEGMRHQIMM
SEADHASLKELCAHPPPTPSNSDLPSRSSAARTRTRPRPGQAKVVQARAR
PRVWTRATPARDINAPTSSKGGSLHLCFLPRRRRNSVGECRLGELEASGR
ARRRENGHADEVRVCPCAGAQEHPQVQPPKEWEAGAPCRAPSLERSAEGG
RPRGRGQEYIFHG*
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