mRNA_A-nodosum_M_contig8182.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8182.1.1
Unique NamemRNA_A-nodosum_M_contig8182.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8182.1.1 vs. uniprot
Match: D7G889_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G889_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.260e-35
Identity = 71/110 (64.55%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    7 GVPCGVVVVEERDTRGSSVRRSRRTGTVVYATVHGPGGGRVGNVEKKGVRGAATLELVGDAGTEAYAFQRDRCRIFRSFLGDGKLTVCTEGMRHQIMMSEADHASLKELC 336
            GV CGVVVVEERD RGSS+ RSRRTGT+V+AT  G GGG           G+  ++LVGDAGTE Y FQR RC++FRSF+  GKLTVCT GMRHQIM+SEAD   L ELC
Sbjct:    6 GVVCGVVVVEERDARGSSLGRSRRTGTLVHATPRGTGGGG----------GSVAVDLVGDAGTETYMFQRGRCKLFRSFVHHGKLTVCTAGMRHQIMLSEADPVQLGELC 105
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8182.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G889_ECTSI1.260e-3564.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8182contigA-nodosum_M_contig8182:21846..23066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010710.1
Cds size792
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870137.5846813-CDS-A-nodosum_M_contig8182:21845..221361680870137.5846813-CDS-A-nodosum_M_contig8182:21845..22136Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8182 21846..22136 +
1680870137.5989773-CDS-A-nodosum_M_contig8182:22544..225901680870137.5989773-CDS-A-nodosum_M_contig8182:22544..22590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8182 22545..22590 +
1680870137.6700094-CDS-A-nodosum_M_contig8182:22611..230661680870137.6700094-CDS-A-nodosum_M_contig8182:22611..23066Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8182 22612..23066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8182.1.1prot_A-nodosum_M_contig8182.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8182 21846..23066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8182.1.1

>prot_A-nodosum_M_contig8182.1.1 ID=prot_A-nodosum_M_contig8182.1.1|Name=mRNA_A-nodosum_M_contig8182.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=264bp
MDGVPCGVVVVEERDTRGSSVRRSRRTGTVVYATVHGPGGGRVGNVEKKG
VRGAATLELVGDAGTEAYAFQRDRCRIFRSFLGDGKLTVCTEGMRHQIMM
SEADHASLKELCAHPPPTPSNSDLPSRSSAARTRTRPRPGQAKVVQARAR
PRVWTRATPARDINAPTSSKGGSLHLCFLPRRRRNSVGECRLGELEASGR
ARRRENGHADEVRVCPCAGAQEHPQVQPPKEWEAGAPCRAPSLERSAEGG
RPRGRGQEYIFHG*
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mRNA from alignment at A-nodosum_M_contig8182:21846..23066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8182.1.1 ID=mRNA_A-nodosum_M_contig8182.1.1|Name=mRNA_A-nodosum_M_contig8182.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1221bp|location=Sequence derived from alignment at A-nodosum_M_contig8182:21846..23066+ (Ascophyllum nodosum dioecious)
ATGGACGGCGTCCCGTGCGGTGTCGTGGTGGTCGAAGAGCGAGACACGCG
AGGATCTTCGGTGCGACGGAGCAGGCGCACCGGAACGGTTGTGTATGCCA
CGGTGCACGGGCCCGGCGGCGGCAGGGTTGGGAACGTTGAGAAGAAAGGA
GTGCGAGGAGCGGCGACGCTCGAGCTGGTCGGTGACGCTGGAACGGAGGC
GTACGCGTTTCAAAGAGACAGGTGTCGAATCTTCCGTTCTTTCCTGGGAG
ATGGAAAGCTGACGGTCTGTACGGAGGGCATGAGGCACCAGGTGCGATGA
TGAATGAGCCCGTTTCGACTTTTCCGATCGCAGGGCTTGATTTTCTCGTT
TCAAGAATCACAGCCAAGGCCCCCGCGAACGAGCCTTGTTTTTAAGCTAG
AAAAGGGTTCCGCGAATCGTTCCACCCCAGAAGATGGCGAGGGTGGCTCG
GTGGTGATCCGCGCGCCTTCTGCGCTGTCGCTGTGCCTTTGAAAGGGTGG
CGTAACGGACCATGGCGTAGTTTTGACGTCATCGCGGGGAGAAGAGTCTC
ACTTAGTGATGGTCACACTTGATGGAATCGCGTCTACCGTACACGTCGAG
ATACACTATAATTGAGCGCTCGCGTTCCTTGTTTGATGCCCCCCGACAAC
TTGGGTCACGCCTTTTGGTGTCGTGCTTTTTTCTTCTGCACCCGGCAAGA
TCATGATGAGCGAGGCCGACCACGCCTCCCTGAAGGAGCTGTGCGGTATT
TGATGGGAGAGGAGAGCGCACCCGCCTCCGACGCCTTCCAACTCCGATCT
TCCATCCCGATCGAGCGCTGCCCGTACTCGCACACGGCCACGACCGGGCC
AGGCCAAAGTCGTTCAAGCCCGAGCGAGGCCGCGAGTCTGGACGCGGGCT
ACTCCAGCCCGCGATATTAACGCGCCCACGTCGTCGAAAGGCGGCTCCCT
TCACCTCTGCTTTCTTCCGAGAAGGCGAAGAAATTCAGTGGGCGAGTGCA
GACTCGGCGAGCTCGAGGCCTCCGGTCGCGCTAGAAGGAGAGAGAATGGG
CACGCCGACGAAGTCCGAGTGTGCCCGTGTGCCGGAGCGCAAGAGCACCC
GCAAGTTCAGCCCCCAAAAGAATGGGAAGCCGGTGCCCCCTGCAGAGCTC
CCTCTCTCGAAAGATCAGCAGAAGGTGGTCGACCTCGTGGCCGCGGGCAA
GAGTATATTTTTCACGGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8182:21846..23066+

>mRNA_A-nodosum_M_contig8182.1.1 ID=mRNA_A-nodosum_M_contig8182.1.1|Name=mRNA_A-nodosum_M_contig8182.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig8182:21846..23066+ (Ascophyllum nodosum dioecious)
ATGGACGGCGTCCCGTGCGGTGTCGTGGTGGTCGAAGAGCGAGACACGCG
AGGATCTTCGGTGCGACGGAGCAGGCGCACCGGAACGGTTGTGTATGCCA
CGGTGCACGGGCCCGGCGGCGGCAGGGTTGGGAACGTTGAGAAGAAAGGA
GTGCGAGGAGCGGCGACGCTCGAGCTGGTCGGTGACGCTGGAACGGAGGC
GTACGCGTTTCAAAGAGACAGGTGTCGAATCTTCCGTTCTTTCCTGGGAG
ATGGAAAGCTGACGGTCTGTACGGAGGGCATGAGGCACCAGATCATGATG
AGCGAGGCCGACCACGCCTCCCTGAAGGAGCTGTGCGCGCACCCGCCTCC
GACGCCTTCCAACTCCGATCTTCCATCCCGATCGAGCGCTGCCCGTACTC
GCACACGGCCACGACCGGGCCAGGCCAAAGTCGTTCAAGCCCGAGCGAGG
CCGCGAGTCTGGACGCGGGCTACTCCAGCCCGCGATATTAACGCGCCCAC
GTCGTCGAAAGGCGGCTCCCTTCACCTCTGCTTTCTTCCGAGAAGGCGAA
GAAATTCAGTGGGCGAGTGCAGACTCGGCGAGCTCGAGGCCTCCGGTCGC
GCTAGAAGGAGAGAGAATGGGCACGCCGACGAAGTCCGAGTGTGCCCGTG
TGCCGGAGCGCAAGAGCACCCGCAAGTTCAGCCCCCAAAAGAATGGGAAG
CCGGTGCCCCCTGCAGAGCTCCCTCTCTCGAAAGATCAGCAGAAGGTGGT
CGACCTCGTGGCCGCGGGCAAGAGTATATTTTTCACGGGTGA
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