prot_A-nodosum_M_contig8.57.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8.57.1
Unique Nameprot_A-nodosum_M_contig8.57.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length82
Homology
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.690e-51
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDEDDL 81
            MNRSWDHIQNKYVGTGHSDT+KFEWATNQHRDSIASH+GHSDLL YFAVAENNA+GRVRYQLLEKMLQPCGPPP KD+DD+
Sbjct:   42 MNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDDI 122          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.230e-42
Identity = 60/79 (75.95%), Postives = 72/79 (91.14%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DTSKFEWA NQHRD++ASH+GH D+LAYFAVAEN +IGRVRY +LEKM+QPCGPPP K+ED
Sbjct:    8 INRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A662XDD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDD1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.740e-42
Identity = 61/79 (77.22%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD+LA+FAVAEN AIGRVRY +LEKMLQPCGPPP K+ED
Sbjct:   59 VNRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLEKMLQPCGPPPQKEED 137          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.520e-42
Identity = 59/78 (75.64%), Postives = 72/78 (92.31%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDE 78
            +NR W+H+Q+KYVGTGH+DTSKFEWA NQHRD++ASH+GHSD+LAYFAVAEN +IGRVR+ +LEKMLQPCGPPP K +
Sbjct:    8 INRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLEKMLQPCGPPPKKQD 85          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM)

HSP 1 Score: 140 bits (353), Expect = 6.720e-42
Identity = 59/79 (74.68%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD+LAYFAVAEN ++GRVRY +LEKMLQPCGPPP K+E+
Sbjct:    9 INRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 87          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A835ZDN9_9STRA (Splicing factor subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.440e-41
Identity = 60/80 (75.00%), Postives = 73/80 (91.25%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDEDD 80
             N+SWDHIQ K+VGTGH DTSKFEWATNQHRD+IAS+VGHSD++ Y++VA+N + GRVRY L+EKMLQPCGPPPPKD++D
Sbjct:    8 FNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDED 87          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.400e-41
Identity = 59/79 (74.68%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD+LAYFAVAEN ++GRVRY +LEKMLQPCGPPP K+E+
Sbjct:   51 INRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 129          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A024TML8_9STRA (Splicing factor subunit n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TML8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.190e-40
Identity = 55/79 (69.62%), Postives = 72/79 (91.14%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DTSKFEWA NQHRD++ASH+GH+D+L+YFAVAEN ++GR+R+ +LEKM+QPCGPPP K E+
Sbjct:    8 INRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLSYFAVAENESVGRLRFNMLEKMIQPCGPPPKKQEE 86          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: F0W9E9_9STRA (Splicing factor subunit n=2 Tax=Albugo TaxID=65356 RepID=F0W9E9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.270e-40
Identity = 56/79 (70.89%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GH+D+L YFAVAEN +I RVRY +LE+MLQPCGPPP K+E+
Sbjct:    8 VNRQWEHLQAKYVGTGHADTTKFEWALNQHRDTLASHIGHADMLLYFAVAENESIARVRYNMLERMLQPCGPPPQKEEE 86          
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A3M6VKF8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.070e-39
Identity = 57/79 (72.15%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    1 MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 79
            +NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD++AYFAVAEN ++GRVRY +LEK+LQPCGPPP K+E+
Sbjct:  131 INRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRYNMLEKILQPCGPPPQKEEE 209          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXA2_ECTSI1.690e-5191.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1W0A9Q9_9STRA3.230e-4275.95Splicing factor subunit n=1 Tax=Thraustotheca clav... [more]
A0A662XDD1_9STRA3.740e-4277.22Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A6G0XHV2_9STRA6.520e-4275.64Splicing factor subunit n=1 Tax=Aphanomyces euteic... [more]
H3G531_PHYRM6.720e-4274.68Splicing factor subunit n=20 Tax=Oomycota TaxID=47... [more]
A0A835ZDN9_9STRA1.440e-4175.00Splicing factor subunit n=1 Tax=Tribonema minus Ta... [more]
A0A8J5IQX8_9STRA2.400e-4174.68Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A024TML8_9STRA2.190e-4069.62Splicing factor subunit n=5 Tax=Saprolegniaceae Ta... [more]
F0W9E9_9STRA6.270e-4070.89Splicing factor subunit n=2 Tax=Albugo TaxID=65356... [more]
A0A3M6VKF8_9STRA2.070e-3972.15Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017089Splicing factor 3B, subunit 5PIRSFPIRSF037010SF3B5coord: 1..80
e-value: 4.6E-36
score: 120.8
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 3..74
e-value: 7.7E-35
score: 118.9
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978SPLICING FACTOR 3B SUBUNIT 5coord: 2..79
NoneNo IPR availablePANTHERPTHR20978:SF0SPLICING FACTOR 3B SUBUNIT 5coord: 2..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:717967..719341 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.57.1mRNA_A-nodosum_M_contig8.57.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8 717304..720159 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8.57.1 ID=prot_A-nodosum_M_contig8.57.1|Name=mRNA_A-nodosum_M_contig8.57.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVA
ENNAIGRVRYQLLEKMLQPCGPPPPKDEDDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017089Splicing_factor_3B_subunit_5
IPR009846SF3b5/RDS3-10