mRNA_A-nodosum_M_contig8.57.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI) HSP 1 Score: 173 bits (438), Expect = 3.310e-48 Identity = 79/90 (87.78%), Postives = 87/90 (96.67%), Query Frame = 3
Query: 792 AS*AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDEDDL 1061
A+ AA+RF+MNRSWDHIQNKYVGTGHSDT+KFEWATNQHRDSIASH+GHSDLL YFAVAENNA+GRVRYQLLEKMLQPCGPPP KD+DD+
Sbjct: 33 ATMAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDDI 122
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA) HSP 1 Score: 148 bits (373), Expect = 2.480e-39 Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+RF++NR W+H+Q KYVGTGH+DTSKFEWA NQHRD++ASH+GH D+LAYFAVAEN +IGRVRY +LEKM+QPCGPPP K+ED
Sbjct: 2 AADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A662XDD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDD1_9STRA) HSP 1 Score: 149 bits (377), Expect = 3.190e-39 Identity = 65/85 (76.47%), Postives = 79/85 (92.94%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+RF++NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD+LA+FAVAEN AIGRVRY +LEKMLQPCGPPP K+ED
Sbjct: 53 AADRFNVNRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLEKMLQPCGPPPQKEED 137
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA) HSP 1 Score: 147 bits (371), Expect = 4.780e-39 Identity = 63/84 (75.00%), Postives = 78/84 (92.86%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDE 1052
AA+RF++NR W+H+Q+KYVGTGH+DTSKFEWA NQHRD++ASH+GHSD+LAYFAVAEN +IGRVR+ +LEKMLQPCGPPP K +
Sbjct: 2 AADRFNINRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLEKMLQPCGPPPKKQD 85
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM) HSP 1 Score: 147 bits (371), Expect = 4.930e-39 Identity = 63/85 (74.12%), Postives = 79/85 (92.94%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+RF++NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD+LAYFAVAEN ++GRVRY +LEKMLQPCGPPP K+E+
Sbjct: 3 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 87
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A835ZDN9_9STRA (Splicing factor subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN9_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.010e-38 Identity = 64/86 (74.42%), Postives = 79/86 (91.86%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDEDD 1058
AA+RF+ N+SWDHIQ K+VGTGH DTSKFEWATNQHRD+IAS+VGHSD++ Y++VA+N + GRVRY L+EKMLQPCGPPPPKD++D
Sbjct: 2 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDED 87
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.790e-38 Identity = 63/85 (74.12%), Postives = 79/85 (92.94%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+RF++NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD+LAYFAVAEN ++GRVRY +LEKMLQPCGPPP K+E+
Sbjct: 45 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 129
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A024TML8_9STRA (Splicing factor subunit n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TML8_9STRA) HSP 1 Score: 142 bits (358), Expect = 3.390e-37 Identity = 58/85 (68.24%), Postives = 78/85 (91.76%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+R+++NR W+H+Q KYVGTGH+DTSKFEWA NQHRD++ASH+GH+D+L+YFAVAEN ++GR+R+ +LEKM+QPCGPPP K E+
Sbjct: 2 AADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLSYFAVAENESVGRLRFNMLEKMIQPCGPPPKKQEE 86
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: F0W9E9_9STRA (Splicing factor subunit n=2 Tax=Albugo TaxID=65356 RepID=F0W9E9_9STRA) HSP 1 Score: 142 bits (358), Expect = 3.390e-37 Identity = 60/85 (70.59%), Postives = 77/85 (90.59%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+RF++NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GH+D+L YFAVAEN +I RVRY +LE+MLQPCGPPP K+E+
Sbjct: 2 AADRFNVNRQWEHLQAKYVGTGHADTTKFEWALNQHRDTLASHIGHADMLLYFAVAENESIARVRYNMLERMLQPCGPPPQKEEE 86
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Match: A0A3M6VKF8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF8_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.400e-36 Identity = 61/85 (71.76%), Postives = 79/85 (92.94%), Query Frame = 3
Query: 801 AANRFDMNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAENNAIGRVRYQLLEKMLQPCGPPPPKDED 1055
AA+RF++NR W+H+Q KYVGTGH+DT+KFEWA NQHRD++ASH+GHSD++AYFAVAEN ++GRVRY +LEK+LQPCGPPP K+E+
Sbjct: 125 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRYNMLEKILQPCGPPPQKEEE 209 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8.57.1 >prot_A-nodosum_M_contig8.57.1 ID=prot_A-nodosum_M_contig8.57.1|Name=mRNA_A-nodosum_M_contig8.57.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp MNRSWDHIQNKYVGTGHSDTSKFEWATNQHRDSIASHVGHSDLLAYFAVAback to top mRNA from alignment at A-nodosum_M_contig8:717304..720159- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8.57.1 ID=mRNA_A-nodosum_M_contig8.57.1|Name=mRNA_A-nodosum_M_contig8.57.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2856bp|location=Sequence derived from alignment at A-nodosum_M_contig8:717304..720159- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8:717304..720159- >mRNA_A-nodosum_M_contig8.57.1 ID=mRNA_A-nodosum_M_contig8.57.1|Name=mRNA_A-nodosum_M_contig8.57.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig8:717304..720159- (Ascophyllum nodosum dioecious)back to top |