prot_A-nodosum_M_contig123.63.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig123.63.1
Unique Nameprot_A-nodosum_M_contig123.63.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length165
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig123.63.1 vs. uniprot
Match: D7FQY4_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.160e-39
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 0 
Query:   15 FTCDVGPLLFDWWTIESCTSLYLSCVPVIMLGLARHWAFSCVSGSNKSSKGIPTSRTTTLLENSGLETSSTGVQPGRLGKWHRFSWTMISTTGAALSLLSMLVVMTYNSVLFMAVLVG 132
            FTCDVG L+F WWT+ +C + YLSC+PVI+L +ARHWAF+  + +  SSK    SR T LL+ +G E SS G  P  + +W RF WTM+STTGAALSLLSMLVVMTYNS LF+AVLVG
Sbjct:   16 FTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAIATSTATSSKRGSASRNTALLDGNGFENSS-GRPP--INRWTRFVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVG 130
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.63.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY4_ECTSI1.160e-3961.86Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007274Ctr copper transporterPFAMPF04145Ctrcoord: 11..132
e-value: 1.9E-10
score: 41.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig123contigA-nodosum_M_contig123:545515..551376 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig123.63.1mRNA_A-nodosum_M_contig123.63.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig123 545515..551635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig123.63.1 ID=prot_A-nodosum_M_contig123.63.1|Name=mRNA_A-nodosum_M_contig123.63.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
MSMDMDMDMSMSFEFTCDVGPLLFDWWTIESCTSLYLSCVPVIMLGLARH
WAFSCVSGSNKSSKGIPTSRTTTLLENSGLETSSTGVQPGRLGKWHRFSW
TMISTTGAALSLLSMLVVMTYNSVLFMAVLVGGENDRPQLFVALMFDFSI
FPRFMLALQDRTDG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter